PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009628526.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 284aa MW: 32994.7 Da PI: 5.6308

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009628526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.1	7e-14	54	139	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+ A GF +rk +++++ rn+e t+ f Cs+eg++ ++ +++r+r e r+g ++k k + ++ wev +++eHnH++ XP_009628526.1 54 AYNSNALAKGFGIRKGANTYN-RNKELTRCLFLCSCEGQSPLYSNY-LERKRQRLEYRCGRMTRIKFKIS-NEIWEVFGFSNEHNHPMI 139 599************9999.7788**********999998.78888888888888888888887.*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-11	54	139	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEDHFAEDIN YEGEDYTVND QDCSTFVHNV SNINSDFVIK IGMKFGSEDE SYEAYNSNAL 60 AKGFGIRKGA NTYNRNKELT RCLFLCSCEG QSPLYSNYLE RKRQRLEYRC GRMTRIKFKI 120 SNEIWEVFGF SNEHNHPMIE ENLKHFILSG RKLTTATKDI LSSMVDADIR TKKVVRYLQN 180 EAGGIENARF IEQDAHNFIQ AHKRSMINNG DAQTLVDRFI HMQSEDSNFF YSFQVDEDGN 240 IKSTQKNEST NRVFTEMACK TMSLTEFVNH YEQRAAEMRD IDAT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628526.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A1S3ZUA7	1e-154	A0A1S3ZUA7_TOBAC; Uncharacterized protein
STRING	XP_009628526.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-20	FAR1-related sequence 10