PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 252aa MW: 29145.8 Da PI: 6.076 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.2 | 4.5e-07 | 95 | 148 | 36 | 91 |
FAR1 36 skegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +eg+ e+kk k r+++++++ +C+ak++ +e++g +++k++++ nH+l p XP_009628426.1 95 EEEGEGGEDKKM--KPRNKHVTKKRNCRAKINKILEENGSQRISKVVKKYNHQLEP 148 556666666655..9999**************99*******************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAEAGILLVL SHLQIFDRMC ELRMIWPRLG RTLVTDARSF PHLRGRRRDV KGVEADDDSF 60 MNEDEWVNID SDDNFNDGED LVDDDDNDDD NYYLEEEGEG GEDKKMKPRN KHVTKKRNCR 120 AKINKILEEN GSQRISKVVK KYNHQLEPAL SRLMDGHKSL SNSLKRALIA KDIVGLRPSK 180 NIRVAEVLAG GPDNLGYTLK DCRNYILKSK KFQLQEEDAQ SLLKSFSDMQ QKDREFYYSV 240 DMDSFGRLRN VV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628426.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1J6KKW2 | 4e-81 | A0A1J6KKW2_NICAT; Protein far-red impaired response 1 (Fragment) | ||||
STRING | XP_009628426.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 9e-11 | FAR1 family protein |