PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 310aa    MW: 33857.7 Da    PI: 8.6125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000222042421255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_009628050.1 204 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 242
                     5567778899999999987.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-10202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.01E-6204246No hitNo description
Gene3DG3DSA:4.10.280.108.0E-8206249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAGNPTNNWW SMMMNGSMHP NHESQHFSSS SSSSSSSSSQ LFYGSSNFLA DINIPSQDFP  60
RSWSQLLLSG LSGEQEKSGM SHFHQYKKLQ EKWEEVQSLN PINPSSSSFR VPVVDVKPQV  120
VGQVLYSNYQ DLPAASSPAN SCVTTNLSHD ILNFSGNKIT SKVEVKHQHP DHSSECNSTR  180
SGGVTKKARI QHSSAQPSLK LQVRKEKLGD RITALHQLVS PFGKTDTASV LSEAIGYIRF  240
LQGQIQALSS PYMGNVAGSM GHTHQQSDSQ HRAKDLRSRG LCLAPISCTQ HVGNDIVADY  300
WAPALGGGYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628050.10.0PREDICTED: transcription factor bHLH68-like isoform X1
SwissprotQ8S3D12e-49BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1S3Z4X10.0A0A1S3Z4X1_TOBAC; transcription factor bHLH68-like isoform X1
STRINGXP_009628050.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]