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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 33857.7 Da PI: 8.6125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.8 | 0.00022 | 204 | 242 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_009628050.1 204 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 242 5567778899999999987.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.28 | 192 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-10 | 202 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.01E-6 | 204 | 246 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.0E-8 | 206 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MAGNPTNNWW SMMMNGSMHP NHESQHFSSS SSSSSSSSSQ LFYGSSNFLA DINIPSQDFP 60 RSWSQLLLSG LSGEQEKSGM SHFHQYKKLQ EKWEEVQSLN PINPSSSSFR VPVVDVKPQV 120 VGQVLYSNYQ DLPAASSPAN SCVTTNLSHD ILNFSGNKIT SKVEVKHQHP DHSSECNSTR 180 SGGVTKKARI QHSSAQPSLK LQVRKEKLGD RITALHQLVS PFGKTDTASV LSEAIGYIRF 240 LQGQIQALSS PYMGNVAGSM GHTHQQSDSQ HRAKDLRSRG LCLAPISCTQ HVGNDIVADY 300 WAPALGGGYL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628050.1 | 0.0 | PREDICTED: transcription factor bHLH68-like isoform X1 | ||||
Swissprot | Q8S3D1 | 2e-49 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A1S3Z4X1 | 0.0 | A0A1S3Z4X1_TOBAC; transcription factor bHLH68-like isoform X1 | ||||
STRING | XP_009628050.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1519 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 1e-50 | bHLH family protein |
Publications ? help Back to Top | |||
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