PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009628050.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 310aa MW: 33857.7 Da PI: 8.6125

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009628050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	204	242	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_009628050.1 204 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 242 5567778899999999987.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.28	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-10	202	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.01E-6	204	246	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.0E-8	206	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAGNPTNNWW SMMMNGSMHP NHESQHFSSS SSSSSSSSSQ LFYGSSNFLA DINIPSQDFP 60 RSWSQLLLSG LSGEQEKSGM SHFHQYKKLQ EKWEEVQSLN PINPSSSSFR VPVVDVKPQV 120 VGQVLYSNYQ DLPAASSPAN SCVTTNLSHD ILNFSGNKIT SKVEVKHQHP DHSSECNSTR 180 SGGVTKKARI QHSSAQPSLK LQVRKEKLGD RITALHQLVS PFGKTDTASV LSEAIGYIRF 240 LQGQIQALSS PYMGNVAGSM GHTHQQSDSQ HRAKDLRSRG LCLAPISCTQ HVGNDIVADY 300 WAPALGGGYL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628050.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	2e-49	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A1S3Z4X1	0.0	A0A1S3Z4X1_TOBAC; transcription factor bHLH68-like isoform X1
STRING	XP_009628050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-50	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]