PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627868.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 493aa    MW: 54786 Da    PI: 7.0279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09309356455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009627868.1 309 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 356
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-17303374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-10303360No hitNo description
Gene3DG3DSA:4.10.280.103.0E-17305373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6309356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEKGNLFIND SNTTMGNYGI GIQENEQLQN CFFNPNWENS DPFESALSSM VSSPVTSNAN  60
IPNVSTNNSS GDNFVLRELI GRLGSICNSR ELSPNSNMIN SSTNNSCYST PLNSPPKLNL  120
SMRGNLSHSQ LPQFSADPGF AERAARFSCF ANKTFKSFNE AEMLQHNRQI VAQQNLENGK  180
LSRVSSNQSI KLSSGSQIQE FKDVNLAPKN SELGDSRENS SVSEQIPVGE NDTNSRKRKS  240
ISKGKSKNAN VSLEKNESNA KRSKSEENNG NDKAKEEEKA AKKEEEKAVP EPPKDYIHVR  300
ARRGQATDAH SLAERVRREK ISERMKLLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE  360
FLSMKLATVN PRMDINMEAL LSKDIFQSRG LLAQNMYPSE SLAQAFPYGF QSQPGQNFHK  420
GTEFPFPINS LNSNLARNSI MQLPSLDGYV EPTPQVPTFF EDDLNSVVQM GFGQNQNQSY  480
PGNVPTSQMK VEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627868.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1U7XQA20.0A0A1U7XQA2_NICSY; transcription factor bHLH62-like
STRINGXP_009627868.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-94bHLH family protein