PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 493aa MW: 54786 Da PI: 7.0279 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.4e-09 | 309 | 356 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009627868.1 309 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 356 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.4E-17 | 303 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-10 | 303 | 360 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-17 | 305 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.682 | 305 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 309 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 311 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MEKGNLFIND SNTTMGNYGI GIQENEQLQN CFFNPNWENS DPFESALSSM VSSPVTSNAN 60 IPNVSTNNSS GDNFVLRELI GRLGSICNSR ELSPNSNMIN SSTNNSCYST PLNSPPKLNL 120 SMRGNLSHSQ LPQFSADPGF AERAARFSCF ANKTFKSFNE AEMLQHNRQI VAQQNLENGK 180 LSRVSSNQSI KLSSGSQIQE FKDVNLAPKN SELGDSRENS SVSEQIPVGE NDTNSRKRKS 240 ISKGKSKNAN VSLEKNESNA KRSKSEENNG NDKAKEEEKA AKKEEEKAVP EPPKDYIHVR 300 ARRGQATDAH SLAERVRREK ISERMKLLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE 360 FLSMKLATVN PRMDINMEAL LSKDIFQSRG LLAQNMYPSE SLAQAFPYGF QSQPGQNFHK 420 GTEFPFPINS LNSNLARNSI MQLPSLDGYV EPTPQVPTFF EDDLNSVVQM GFGQNQNQSY 480 PGNVPTSQMK VEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 239 | SRKRKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627868.1 | 0.0 | PREDICTED: transcription factor bHLH62-like | ||||
TrEMBL | A0A1U7XQA2 | 0.0 | A0A1U7XQA2_NICSY; transcription factor bHLH62-like | ||||
STRING | XP_009627868.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 3e-94 | bHLH family protein |