PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627746.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 382aa    MW: 42388.7 Da    PI: 4.5094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19116165255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  XP_009627746.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 165
                     69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-22116175IPR016177DNA-binding domain
SMARTSM003803.1E-36116179IPR001471AP2/ERF domain
PROSITE profilePS5103224.105116173IPR001471AP2/ERF domain
CDDcd000181.39E-32116174No hitNo description
Gene3DG3DSA:3.30.730.102.3E-32116175IPR001471AP2/ERF domain
PRINTSPR003671.1E-11117128IPR001471AP2/ERF domain
PfamPF008479.1E-12117165IPR001471AP2/ERF domain
PRINTSPR003671.1E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MCGGAIISDD IAPSRTSRRL TAELLWGRSD LSKKQKNLNN YHSKPLRSQV VDLDDDFEAD  60
FQDFKDFSDD EDVEVDVKPF AFSASKNSTV EGSKTVKTVD SDKDADRSSK RKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDVEA RRIRGNKAKV NFPDEAPVPA  180
SRRTVKVNPR KVLPKESLDS TIINNMEDGC YDSLGFLEEK PMTKQYGYED GRSVSGDTGF  240
GSFAPSAGTD IYFNSDVASN SFDCSDFGWG EPCARTPEIS SVLSAAIESN ESQLVEDDAS  300
PMKNLKSSPI NPVANDGNTA NKLSEELSAF ESQMKFLQIP YLEGNWDASV DTFLNSSATQ  360
DGENAMDLWS FDDVPSLMGG DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21116173260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2860100.0AY286010.1 Nicotiana tabacum callus-expressing factor (CEF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627746.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1S4CFH50.0A0A1S4CFH5_TOBAC; ethylene-responsive transcription factor RAP2-12-like
STRINGXP_009627746.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.37e-57related to AP2 12