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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 608aa MW: 67461 Da PI: 6.9862 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 6.9e-12 | 439 | 485 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq XP_009627739.1 439 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITELQ 485 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-55 | 52 | 240 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.475 | 435 | 484 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-18 | 438 | 500 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.67E-13 | 438 | 489 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-17 | 439 | 499 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-9 | 439 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-16 | 441 | 490 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MKIEMGLGNM LWSDEDKAMV AAVLGTKAFD YLMSSSVSAE CSLMAMGNDE NLQNKLSDLV 60 ERPNGANFSW NYAIFWQISR SKSGELVLGW GDGCCREPRE GEGSEITRIL NLRLENEAQQ 120 RMRKRVLEKL HMLFGGTDED NYAFGLDKVT DTEMFFLASM YFSFPRGEGG PGKCFGSGKY 180 VWLSDVMKSS VDYCSRSFLM KSAGMQTIVL IPTDVGVVEL GSVRAISESL ELVQSIKSCF 240 SSFLSLIRAK QAGSVTVVAE KKDGNNFPFS SSFISEQPPN GVPKIFGQNL NSGCTPFREK 300 LVVRKAEDRP LEMYQNGNRA QFLNARNGLR AASWASFSNV KPVNSADPYR PQIPANNVRD 360 FVNGAREEFR TNNFQHQKNA SMQIDFTNSR PVISPAHTVE SEHSDAEASC KEDHAGPVDD 420 KRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAIAH 480 ITELQKKLRD MESESERLGS TSRDANASAS DSPSSETQNR IPDINIEAAN DEVVVRVRCA 540 LETHPASRVI EAFKEARVNV VESKLAAGND AVYHTFVVES SGSEQLTKEK LMAAFSGESN 600 ALRPSPVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 9e-27 | 48 | 241 | 5 | 193 | Transcription factor MYC3 |
4rqw_B | 9e-27 | 48 | 241 | 5 | 193 | Transcription factor MYC3 |
4rru_A | 1e-26 | 9 | 236 | 5 | 227 | Transcription factor MYC3 |
4rs9_A | 9e-27 | 48 | 241 | 5 | 193 | Transcription factor MYC3 |
4ywc_A | 1e-26 | 9 | 236 | 5 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-26 | 9 | 236 | 5 | 227 | Transcription factor MYC3 |
4yz6_A | 9e-27 | 48 | 241 | 5 | 193 | Transcription factor MYC3 |
5gnj_A | 4e-28 | 433 | 498 | 2 | 65 | Transcription factor MYC2 |
5gnj_B | 4e-28 | 433 | 498 | 2 | 65 | Transcription factor MYC2 |
5gnj_E | 4e-28 | 433 | 498 | 2 | 65 | Transcription factor MYC2 |
5gnj_F | 4e-28 | 433 | 498 | 2 | 65 | Transcription factor MYC2 |
5gnj_G | 4e-28 | 433 | 498 | 2 | 65 | Transcription factor MYC2 |
5gnj_I | 4e-28 | 433 | 498 | 2 | 65 | Transcription factor MYC2 |
5gnj_M | 4e-28 | 433 | 498 | 2 | 65 | Transcription factor MYC2 |
5gnj_N | 4e-28 | 433 | 498 | 2 | 65 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 420 | 428 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627739.1 | 0.0 | PREDICTED: transcription factor bHLH13-like | ||||
Refseq | XP_016444111.1 | 0.0 | PREDICTED: transcription factor bHLH13-like isoform X1 | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A1S3XVZ2 | 0.0 | A0A1S3XVZ2_TOBAC; transcription factor bHLH13-like isoform X1 | ||||
STRING | XP_009627739.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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