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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 906aa MW: 100202 Da PI: 6.5452 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.6e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++ + +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F +++ XP_009627652.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI--WNE 218 99*****************************85545444..8************************************************..888 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_009627652.1 219 KNQLFLGIRRA 229 9999****997 PP | |||||||
2 | Auxin_resp | 117.3 | 1.3e-38 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPr+++s+Fvv+++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k XP_009627652.1 254 AAHAAATNSRFTIFYNPRSCPSDFVVPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.02E-47 | 113 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-42 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.34E-21 | 127 | 223 | No hit | No description |
SMART | SM01019 | 2.1E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.365 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.9E-34 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.3E-7 | 764 | 858 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.23E-7 | 767 | 848 | No hit | No description |
PROSITE profile | PS51745 | 23.446 | 773 | 857 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 906 aa Download sequence Send to blast |
MRLSSAGSNQ QSPEGENKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVTASTNKE 60 AEAHIPNYPS LAPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKEA SFLPLDLGTP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPVQELIA RDLHDNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SIIFIWNEKN QLFLGIRRAN RSQTVMPSSV 240 LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RSCPSDFVVP LAKYVKAVYH TRISVGMRFR 300 MLFETEESSV RRYMGTITGI GDLDPVRWPN SHWRSVKGLS ETASLLPRGR GKVGWDESTA 360 GERQPRVSLW EVEPLTTFPM YPSPFPLRLK RSWPPGFPAL SGMKDDDMVM NPMMWLRDVG 420 DGGTQSINFQ GIGVTPWMQP RIDVPIGGMQ MDIYQAMAAG ALQDLRSVDP SKQALTSLLQ 480 LQQSNGVTNN TSGLLYPQLF QQSQGQTAFL PSMAQGQSQV QPVSQPHIFQ QQMLHQNSSN 540 TIHQQQQQSP QEQQPPLQQQ QAIRQLDSSS QSQQTSLQAF CSTQQESFTD TNVNHSTNSI 600 VNPLHSLSGA VTRDEPSQLV SVPRSSSLLS PTGWPPKRVA VDPVLPSASS QRMSPYIDQS 660 GTPNKNVSQN ALSLPTFPGR DCPVGQEGNN DPHNHLLFGF NIDSPSLMQS DMRSLRGVVS 720 DCESTNVPFA SSNYLSNAGN DFSQNPVMAL SGCINVPGFT QTSENAGQES PHNTFVKVYK 780 SGSFGRSLDI TKFSSYHELR SELARMFGLE GLLEDPLRSG WQLVFVDREN DVLLLGDDPW 840 PEFVNSVWCI KILSPHDVQQ MGRQGLELLN SVSMSRSSNN SCDDFANRSE SRNMTSGIMS 900 VATLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-156 | 20 | 373 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627652.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X1 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A1S3YD38 | 0.0 | A0A1S3YD38_TOBAC; Auxin response factor | ||||
STRING | XP_009627652.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2368 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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