PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627217.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 317aa    MW: 34433.8 Da    PI: 5.195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16141187455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  XP_009627217.1 141 VHNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 187
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-20134196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-19134194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.898137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-18140191No hitNo description
PfamPF000102.6E-14141187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MADPYRTNPH PHASSSSPLE SEDMSSFFLN FLQNSSASTS AAAAGFCHRS APETAADSSS  60
NLNFSDPGRF YAAEFKEGVE NVFASAGLGD CDAMDSANRR EFLEDDKVDN FGFSSEECDG  120
LDMPANQNHS RSSKRSRSAE VHNLSEKRRR SRINEKLKAL QTLIPNSNKT DKASMLDEAI  180
EYLKQLQLQV QMLTLRNGLS LYPGYVPGSL QSMQLPSGNE FDGRSFMLSA NGGATLPGNR  240
EMPQTAFEIS NQNLSGKPSV TSNNAENSLA FETTIQNHYG LLNHLASSKD ICRGDTLSRL  300
HLDMSCSGNN SSSGVSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-107HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627217.10.0PREDICTED: transcription factor SPATULA-like
RefseqXP_016487434.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLA0A1S4BEW30.0A0A1S4BEW3_TOBAC; transcription factor SPATULA-like
STRINGXP_009627217.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-37bHLH family protein