PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627197.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 543aa    MW: 59397.2 Da    PI: 6.0865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09357405355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009627197.1 357 NSHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 405
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-17352423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-10352409No hitNo description
PROSITE profilePS5088815.51354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17355421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6357405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDMDSKNDTE QLKRKEDAAN YHSPNMSLEW QLSGSNLTNA SIGMIPKSDP MVDSYYPTIW  60
DRPTNSPNLS FYGNNVQINS STTNPPGIAE IGSGPARGGV DRTVCMSWNP PNAMMKGGVF  120
VPPNIGMLPQ SLAQLPVDSG FIERAARFSC FSGGNLSDMM NPFSIPESVK PCYRGLAPMC  180
RSEEVFASNG LNSPSAIDPQ KQHMRNAVES SKDVPLHSEH ETNKESPLKN AKKNENIARS  240
QGEGKEAVGL SGNESDEADC SGRQEEMGGF REESSSKSLG SKKRKRYGQD AQPDQMKGTQ  300
QPPAERAQAQ TETQGEQNLN STASKPGEKN SKQRSQASDP PKEEYIHIRA RRGQATNSHS  360
LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP  420
QLDFNLDGLL AKDILQLQAG PSSSLVFPPD NMTMPYTSLH ALQSGLLQSG FPGVGNCTDT  480
FRRSINPHFA SMSGGYKDPS SQVPNIWDDQ LHNVVEMGFN SSAPLDSQDI SSSLPPGQMK  540
AES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627197.10.0PREDICTED: transcription factor bHLH49-like isoform X1
RefseqXP_009627204.10.0PREDICTED: transcription factor bHLH49-like isoform X1
TrEMBLA0A314KMY70.0A0A314KMY7_NICAT; Transcription factor bhlh49
STRINGXP_009627192.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-105bHLH family protein