PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627014.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 654aa    MW: 72974.4 Da    PI: 6.4744
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98e-23127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+e+       ++++ +  +l+  d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F   + +
  XP_009627014.1 127 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQQPPWQ--ELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217
                     99****************************975444444..8************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_009627014.1 218 NGELRVGVRR 227
                     999*****97 PP
2Auxin_resp116.32.7e-38253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv +  ++rWp+S+WrsLk
  XP_009627014.1 253 ASHAISTGTLFSVYYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGENTSSRWPDSEWRSLK 335
                     789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-43116256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-40124242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-20125227No hitNo description
PfamPF023621.1E-20127227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251127229IPR003340B3 DNA binding domain
SMARTSM010193.5E-21127229IPR003340B3 DNA binding domain
PfamPF065071.7E-36253335IPR010525Auxin response factor
PfamPF023099.8E-7532574IPR033389AUX/IAA domain
PROSITE profilePS5174527.229538631IPR000270PB1 domain
SuperFamilySSF542775.36E-13540615No hitNo description
PfamPF023091.9E-6583629IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAHLAANHFG GGAHPVAPNE ALYKELWHAC AGPLVTVPRE GEIVYYFPQG HMEQLEASTH  60
QGLDQQLPSF NLPAKILCKV MNIQLRAESD TDEVYAQITL LPEQDQGEIT RPYPPLPEPQ  120
KCTVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ QPPWQELVAS DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI  240
SSHSMHLGVL ATASHAISTG TLFSVYYKPR TSQSEFIVSV NKYLEARNHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVGE NTSSRWPDSE WRSLKVHWDE PSSILRPDRV SPWEIEPLVT  360
ATPTNTQPPQ RNKRARPQVL PSPVQELPAL GMWKSPGDSP SSFPYCDPSR GRDLYPSPKL  420
SSAASGLGYG ENSSMPLSSK SMYWSSQSDT CTESITPASE KRPANGYRLF GIELLDRPTV  480
DETSPVAMPS ALVENQPAAS LDVDSGNSEP SNPIPSVSCE PEKSSLRSPH ESQSKQIRSC  540
TKVHMQGKAV GRAVDLTRLD SYEDLLKKLE EMFEIEGELR DSTKKWQVVY TDDEDDMMMV  600
GDDPWHEFCS MVRKIYVYTV EEAKKLSPKI KLPVDDVKPG KPVSGATVSN EEKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053583355Auxin response factor 1
4ldw_A0.053583355Auxin response factor 1
4ldw_B0.053583355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0611540.0HM061154.1 Solanum lycopersicum auxin response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627009.10.0PREDICTED: auxin response factor 1
RefseqXP_009627014.10.0PREDICTED: auxin response factor 1
RefseqXP_009627020.10.0PREDICTED: auxin response factor 1
RefseqXP_009627027.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A1S4CGQ20.0A0A1S4CGQ2_TOBAC; Auxin response factor
STRINGXP_009627009.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]