PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009626970.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 376aa    MW: 42664 Da    PI: 7.5786
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009626970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.87.9e-31161471128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkev 92 
                     lp+G++F+Ptdeel   yL+ k+++ ++    +i+e+diyk++P++L   ++k++e ++yfF++  +ky  gk+ +r    ++g+Wka+    e 
  XP_009626970.1  16 LPQGVKFKPTDEELN-LYLRIKCSNGEILP-GIINELDIYKYDPKELSgFAIKHTEGRMYFFTPLTNKYDVGKKIQRkiYSDKGFWKASQARSER 108
                     799**********97.9**********777.79**************966887877899*************99999433669************ PP

             NAM  93 lskkgelvglkktLvfy..kg.rapkgektdWvmheyrl 128
                     ++k+g+ +g+k+ Lv+y  kg +++kg+kt+W+m+e+rl
  XP_009626970.1 109 TNKNGAFTGTKTNLVYYeyKGhKKSKGTKTSWLMQEFRL 147
                     **9**************664548999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3114171IPR003441NAC domain
PROSITE profilePS5100534.5416172IPR003441NAC domain
PfamPF023652.0E-1517147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAMATTDNGY EWKKKLPQGV KFKPTDEELN LYLRIKCSNG EILPGIINEL DIYKYDPKEL  60
SGFAIKHTEG RMYFFTPLTN KYDVGKKIQR KIYSDKGFWK ASQARSERTN KNGAFTGTKT  120
NLVYYEYKGH KKSKGTKTSW LMQEFRLPEN HHPRPVFKGT KNELIICVIY YIGKMKNDDQ  180
VAMLTQCDHP IPPQTSNPNL PFNQNFDQSP YTFPIPHNPY ISHNDNISNC VPLQQYQPHV  240
NTDAIAVVGE GWPVEHASPD LPPLPYYDAM ENLGTFSSIS QNSDLDGFDP SIYLNFDNIN  300
AYMGDEIGSD IPNGIADFRP WPSSSYSTML FTGSCSYSSG ADQNKLETNV TPISQGNQNP  360
SSGSQDQQRK MKKIKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-161617017163NO APICAL MERISTEM PROTEIN
1ut4_B2e-161617017163NO APICAL MERISTEM PROTEIN
1ut7_A2e-161617017163NO APICAL MERISTEM PROTEIN
1ut7_B2e-161617017163NO APICAL MERISTEM PROTEIN
4dul_A2e-161617017163NAC domain-containing protein 19
4dul_B2e-161617017163NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626970.10.0PREDICTED: protein FEZ-like
TrEMBLA0A1U7XNA60.0A0A1U7XNA6_NICSY; NAC domain-containing protein 18-like
STRINGXP_009626970.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1556777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-18NAC family protein