PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 605aa MW: 65535.5 Da PI: 8.3946 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.1 | 1.8e-24 | 223 | 267 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_009626682.1 223 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 267 79****************************************985 PP | |||||||
2 | QLQ | 61.8 | 1.9e-21 | 155 | 191 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k XP_009626682.1 155 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 191 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.4E-12 | 155 | 191 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.2E-16 | 156 | 190 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.516 | 156 | 191 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.663 | 223 | 267 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.2E-21 | 224 | 266 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MDFGVVGGLD NGGVICSDNT SNMFTTAAAA AASVETKQKW YGSTGFHKHE RSSSATTNTT 60 VTEDDWNNKD TKLAKTSDDF SSSKAAAATV LFQQQLRSNC TNSQQMLSFS SPNSQNVTMP 120 YYHYTSTPFT RNSSGCGSGA MNAGNIHGVI AGLKGPFTPS QWMELEHQAL IYKYITANVP 180 IPPYLLNPIR KALESTGFTT FAGLRPNALG WGAFHLGFSN SNDPEPGRCR RTDGKKWRCS 240 RDAVADQKYC ERHMNRGRHR SRKPVEGQTG ATSAKLMNIS SSASAALAPG GAASNTLPLS 300 HPRLSNLLPP AVTNPSTTSP YLERNYTPKE NFGGRYSDTK GLTVVSSSEK ESQYSIQKEQ 360 NLYGVTSRAE FGLVCADSLI NPLNKNSSLV NCRGYGNSED IRDQESKSQH HSLRQFMDDW 420 PKNQSDQSTV SWPDIDLQTD RTQLSISIPV VTSDFMSSTS SPANDKLTTS PQYRPSQEHE 480 TTTQMGLRIG TIISEHNQRQ GNWIPITWET SMGGPLGEVL HSTNNSSGDC KTKSAALNLM 540 TEGWDRSPRM GSSPTGVLQK SSFGSLSNSS AGSSPRAENS KTNEGSSLCN GLLGTTLMNP 600 TLPAM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626682.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
TrEMBL | A0A1S3XG67 | 0.0 | A0A1S3XG67_TOBAC; growth-regulating factor 1-like | ||||
STRING | XP_009626682.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 2e-91 | growth-regulating factor 1 |