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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626581.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 302aa MW: 33564.1 Da PI: 9.3241 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.2 | 2.1e-31 | 145 | 201 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rak+e ekk +k+rkpylheSRh+hA+rR+Rg+gGrF XP_009626581.1 145 EEPVFVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 201 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.1E-36 | 143 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.628 | 144 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.7E-27 | 146 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.0E-24 | 147 | 169 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 149 | 169 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.0E-24 | 178 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MPTIAKHDDR QLETGLRMTS QSTTQMQPWW QGYGDNTMSL VSENTVAQGN AEGGNEEKET 60 NAQATESGSK GNNVQYKQHL KHITSTTVTI MGEQQKELTG HSAMLTSYPY PDLQYGGMMT 120 YGAPVHPHLF EIHHARMPLP LDMEEEPVFV NAKQYHGILR RRQIRAKAEL EKKAIKARKP 180 YLHESRHQHA MRRARGTGGR FLNTKKLNDM DCITDEAKKY GATIPTHSGN SSGSGSSDQR 240 EKEGSTVQDM HKGQRSFSTG NGHGSSVYFS QYAGNEQQNG HYSHGSWSLL VSQASRGAAS 300 NN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-20 | 145 | 205 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-106 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626581.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 | ||||
TrEMBL | A0A1S4DKH4 | 0.0 | A0A1S4DKH4_TOBAC; nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
STRING | XP_009626580.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 1e-29 | nuclear factor Y, subunit A7 |