PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 309aa MW: 34319.1 Da PI: 8.453 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.1 | 2.2e-31 | 152 | 208 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rak+e ekk +k+rkpylheSRh+hA+rR+Rg+gGrF XP_009626580.1 152 EEPVFVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 208 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.1E-36 | 150 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.628 | 151 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.9E-27 | 153 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.1E-24 | 154 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 156 | 176 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.1E-24 | 185 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MSFDICPSWI APIIQLCELE TGLRMTSQST TQMQPWWQGY GDNTMSLVSE NTVAQGNAEG 60 GNEEKETNAQ ATESGSKGNN VQYKQHLKHI TSTTVTIMGE QQKELTGHSA MLTSYPYPDL 120 QYGGMMTYGA PVHPHLFEIH HARMPLPLDM EEEPVFVNAK QYHGILRRRQ IRAKAELEKK 180 AIKARKPYLH ESRHQHAMRR ARGTGGRFLN TKKLNDMDCI TDEAKKYGAT IPTHSGNSSG 240 SGSSDQREKE GSTVQDMHKG QRSFSTGNGH GSSVYFSQYA GNEQQNGHYS HGSWSLLVSQ 300 ASRGAASNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-20 | 152 | 212 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-106 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626580.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
TrEMBL | A0A1S4DKH4 | 0.0 | A0A1S4DKH4_TOBAC; nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
STRING | XP_009626580.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11232 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 3e-29 | nuclear factor Y, subunit A7 |