PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009626530.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 153aa MW: 17065.5 Da PI: 6.2669

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009626530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.7	1.7e-14	22	64	8	50
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + f+k ++ i+KKA+ELS+ ++aev ++ifs++gk y+y XP_009626530.1 22 ECLTAFAKTKAIIFKKAHELSITTGAEVGLLIFSPSGKPYTYG 64 55699************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.1E-14	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.661	7	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-10	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-18	9	98	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-14	25	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-10	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-10	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MAKNKSLSRQ KAEIKALESM VECLTAFAKT KAIIFKKAHE LSITTGAEVG LLIFSPSGKP 60 YTYGSPHHFD AIADKFLMWK LNDGKNNYSD IVEYNRNKEY ELLMVQKEKL EKLLDIIQEI 120 QNRSAGPNSV ESCMMNDLNV AVDADSGETS ASN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626530.1	1e-111	PREDICTED: MADS-box protein AGL71-like
Refseq	XP_016455412.1	1e-111	PREDICTED: MADS-box protein AGL71-like
TrEMBL	A0A1S3YTU3	1e-109	A0A1S3YTU3_TOBAC; MADS-box protein AGL71-like
STRING	XP_009626530.1	1e-110	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14083	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	3e-11	AGAMOUS-like 64