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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 408aa MW: 46228.4 Da PI: 7.2757 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.5 | 7.6e-51 | 43 | 168 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_009626107.1 43 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSEN 136 79***************************.89***************8778899***************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +t+W+m+eyrl XP_009626107.1 137 SQSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 168 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.714 | 42 | 189 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-56 | 42 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 44 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MAIVPFTSII MSQSQQHEQQ DDTINNINNT IKDDDDHEHD MVMPGFRFHP TEEELVEFYL 60 RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN GDRPNRVTTS 120 GYWKATGADR MIRSENSQSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERLQKAE 180 ISLCRVHKRS GVEDHPSLPR SLPTTRASSS SSSRGTTNSI KKQHHQQVVQ NSLISPYVVG 240 QSSQQQIDEK LSTETSASST STDHHHHHHV ATSLGLNSLS NSYNSIALDP MAGGAVTSTS 300 SLSPFASLVS PSSTGAVVED LHKLINLDQQ VAFHNQQHFH NNPINHIPAV ASQQFLQPQV 360 LPHHAQPQSL LFQGSLQSSS SFSDRLWEWS SIQTDANCKD YQPNNPFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-56 | 31 | 189 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-56 | 31 | 189 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-56 | 31 | 189 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-56 | 31 | 189 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-56 | 31 | 189 | 6 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-56 | 31 | 189 | 6 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626107.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like isoform X1 | ||||
Swissprot | Q9ZVP8 | 1e-118 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A1S4BSX5 | 0.0 | A0A1S4BSX5_TOBAC; transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
STRING | XP_009626107.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-110 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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