PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009626107.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 408aa MW: 46228.4 Da PI: 7.2757

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009626107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.5	7.6e-51	43	168	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_009626107.1 43 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSEN 136 79*************************.89***********8778899************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +t+W+m+eyrl XP_009626107.1 137 SQSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 168 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.714	42	189	IPR003441	NAC domain
SuperFamily	SSF101941	6.02E-56	42	188	IPR003441	NAC domain
Pfam	PF02365	2.8E-25	44	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MAIVPFTSII MSQSQQHEQQ DDTINNINNT IKDDDDHEHD MVMPGFRFHP TEEELVEFYL 60 RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN GDRPNRVTTS 120 GYWKATGADR MIRSENSQSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERLQKAE 180 ISLCRVHKRS GVEDHPSLPR SLPTTRASSS SSSRGTTNSI KKQHHQQVVQ NSLISPYVVG 240 QSSQQQIDEK LSTETSASST STDHHHHHHV ATSLGLNSLS NSYNSIALDP MAGGAVTSTS 300 SLSPFASLVS PSSTGAVVED LHKLINLDQQ VAFHNQQHFH NNPINHIPAV ASQQFLQPQV 360 LPHHAQPQSL LFQGSLQSSS SFSDRLWEWS SIQTDANCKD YQPNNPFK

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MAIVPFTSII MSQSQQHEQQ DDTINNINNT IKDDDDHEHD MVMPGFRFHP TEEELVEFYL  60
RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN GDRPNRVTTS  120
GYWKATGADR MIRSENSQSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERLQKAE  180
ISLCRVHKRS GVEDHPSLPR SLPTTRASSS SSSRGTTNSI KKQHHQQVVQ NSLISPYVVG  240
QSSQQQIDEK LSTETSASST STDHHHHHHV ATSLGLNSLS NSYNSIALDP MAGGAVTSTS  300
SLSPFASLVS PSSTGAVVED LHKLINLDQQ VAFHNQQHFH NNPINHIPAV ASQQFLQPQV  360
LPHHAQPQSL LFQGSLQSSS SFSDRLWEWS SIQTDANCKD YQPNNPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-56	31	189	6	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-56	31	189	6	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-56	31	189	6	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-56	31	189	6	165	NO APICAL MERISTEM PROTEIN
4dul_A	7e-56	31	189	6	165	NAC domain-containing protein 19
4dul_B	7e-56	31	189	6	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626107.1	0.0	PREDICTED: NAC domain-containing protein 35-like isoform X1
Swissprot	Q9ZVP8	1e-118	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1S4BSX5	0.0	A0A1S4BSX5_TOBAC; transcription factor JUNGBRUNNEN 1-like isoform X1
STRING	XP_009626107.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-110	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]