 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009626107.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
NAC |
| Protein Properties |
Length: 408aa MW: 46228.4 Da PI: 7.2757 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009626107.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 163.5 | 7.6e-51 | 43 | 168 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96
+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++
XP_009626107.1 43 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSEN 136
79***************************.89***************8778899***************************************** PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128
++ +glkktLvfy+g+apkg +t+W+m+eyrl
XP_009626107.1 137 SQSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 168
******************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MAIVPFTSII MSQSQQHEQQ DDTINNINNT IKDDDDHEHD MVMPGFRFHP TEEELVEFYL 60
RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN GDRPNRVTTS 120
GYWKATGADR MIRSENSQSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERLQKAE 180
ISLCRVHKRS GVEDHPSLPR SLPTTRASSS SSSRGTTNSI KKQHHQQVVQ NSLISPYVVG 240
QSSQQQIDEK LSTETSASST STDHHHHHHV ATSLGLNSLS NSYNSIALDP MAGGAVTSTS 300
SLSPFASLVS PSSTGAVVED LHKLINLDQQ VAFHNQQHFH NNPINHIPAV ASQQFLQPQV 360
LPHHAQPQSL LFQGSLQSSS SFSDRLWEWS SIQTDANCKD YQPNNPFK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 7e-56 | 31 | 189 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 7e-56 | 31 | 189 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 7e-56 | 31 | 189 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 7e-56 | 31 | 189 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 7e-56 | 31 | 189 | 6 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 7e-56 | 31 | 189 | 6 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
