PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009625858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28837.5 Da PI: 5.4422 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.7 | 2.8e-15 | 73 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN+ ++ Lr+llP + ++kKls ++ ++ +YI++Lq XP_009625858.1 73 KKLNHNASERDRRKKINTLYSSLRSLLPAsD---HAKKLSIPSTISRVLKYIQELQ 125 6789*************************66...9999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.767 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-16 | 73 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.66E-13 | 73 | 129 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-14 | 73 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-12 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-11 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MLAISSSPLF SNNFGWLLED PISHELNMTS AETSSESVVA LQSLSQTRVL QHCDSNKFDQ 60 IINNGDQPDQ MVKKLNHNAS ERDRRKKINT LYSSLRSLLP ASDHAKKLSI PSTISRVLKY 120 IQELQNEVER LIQKKEELIS RTNSNKENSA DFNKQKRRGG VESSSLVISA SEVGDREVVI 180 QISTLKINKG SFAEAVSELE DEGLLLLNSS CFETLEDRVF YTLHFQVQGT MVVELDTLRD 240 KLSSYFEKED KLLPQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625858.1 | 0.0 | PREDICTED: transcription factor ORG2-like isoform X1 | ||||
TrEMBL | A0A1S4AEE1 | 0.0 | A0A1S4AEE1_TOBAC; transcription factor ORG2-like isoform X2 | ||||
STRING | XP_009625857.1 | 1e-175 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 9e-51 | bHLH family protein |