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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009625850.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 205aa MW: 23576.2 Da PI: 10.0164 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009625850.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 75.7 | 3.7e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i++k rqvtfskRr+g+lKKA+ LS+LCd++va ++fs++g+l+++ss
XP_009625850.1 9 KPIKDKNSRQVTFSKRRKGLLKKAKQLSILCDVDVAAVVFSNRGRLFDFSS 59
68***********************************************96 PP
|
| 2 | K-box | 52.6 | 2e-18 | 90 | 170 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++a e Lq+ R+l d++ Ls+ +L +Le+qL+++l + Rs+K++l++e i+ lq+kek l+eenk L+ +++
XP_009625850.1 90 SKYASFMTVGELLQTVERQLEEPDVDGLSVTDLVHLENQLQSALMQARSRKTHLMVEYIKSLQEKEKLLREENKLLEDRIA 170
566777777899***************************************************************998875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 205 aa
Download sequence Send
to blast |
MGRKKVEIKP IKDKNSRQVT FSKRRKGLLK KAKQLSILCD VDVAAVVFSN RGRLFDFSST 60
NSLVEIVRRY HNHVEAEKEI SGDVSDTEHS KYASFMTVGE LLQTVERQLE EPDVDGLSVT 120
DLVHLENQLQ SALMQARSRK THLMVEYIKS LQEKEKLLRE ENKLLEDRIA MIKKNREVNG 180
MASDFTNRAP VRMICGQQRA TLNFL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
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