PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009625850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23576.2 Da PI: 10.0164 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.7 | 3.7e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i++k rqvtfskRr+g+lKKA+ LS+LCd++va ++fs++g+l+++ss XP_009625850.1 9 KPIKDKNSRQVTFSKRRKGLLKKAKQLSILCDVDVAAVVFSNRGRLFDFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 52.6 | 2e-18 | 90 | 170 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++a e Lq+ R+l d++ Ls+ +L +Le+qL+++l + Rs+K++l++e i+ lq+kek l+eenk L+ +++ XP_009625850.1 90 SKYASFMTVGELLQTVERQLEEPDVDGLSVTDLVHLENQLQSALMQARSRKTHLMVEYIKSLQEKEKLLREENKLLEDRIA 170 566777777899***************************************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.441 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.75E-33 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-28 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.121 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-15 | 96 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGRKKVEIKP IKDKNSRQVT FSKRRKGLLK KAKQLSILCD VDVAAVVFSN RGRLFDFSST 60 NSLVEIVRRY HNHVEAEKEI SGDVSDTEHS KYASFMTVGE LLQTVERQLE EPDVDGLSVT 120 DLVHLENQLQ SALMQARSRK THLMVEYIKS LQEKEKLLRE ENKLLEDRIA MIKKNREVNG 180 MASDFTNRAP VRMICGQQRA TLNFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-17 | 1 | 87 | 1 | 87 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625850.1 | 1e-150 | PREDICTED: agamous-like MADS-box protein AGL27 | ||||
TrEMBL | A0A1S4AZG2 | 1e-137 | A0A1S4AZG2_TOBAC; agamous-like MADS-box protein AGL27 | ||||
STRING | XP_009625850.1 | 1e-149 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 3e-38 | AGAMOUS-like 31 |