PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009625634.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 475aa MW: 52089.2 Da PI: 6.8212

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009625634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.3	2.7e-23	167	210	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rC+RtDGKkWRC r+v +++k+CErH h+++ rsrk++e XP_009625634.1 167 DPEPWRCKRTDGKKWRCTRDVAPDQKYCERHAHKSKPRSRKPVE 210 79***************************************987 PP
2	QLQ	36.9	1.1e-13	108	143	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq++ +Q + Ky++a++PvPp+Ll+++++ XP_009625634.1 108 PFTASQLQEFQRQTIICKYIMASVPVPPQLLLPLSN 143 9********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.3E-5	107	143	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.823	108	143	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.5E-10	108	141	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.489	167	211	IPR014977	WRC domain
Pfam	PF08879	1.1E-18	168	210	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MGNGENTELL DLKMKTTESS PSSYPYKRTM FLPPSSHPHF AAFDKETSSN STCLADDGGG 60 GGGGNGDFVG SDSYDAVSSG AAAALSSRPL QPFSCSARGS MFLSGKAPFT ASQLQEFQRQ 120 TIICKYIMAS VPVPPQLLLP LSNNPSSAHL PQSNTSGLDL KFSRGSDPEP WRCKRTDGKK 180 WRCTRDVAPD QKYCERHAHK SKPRSRKPVE IHNTNNNNNN SNNRHPPTPT SRNHHHSFQF 240 PTVQLSDQTR CIEWLGRGDR GGTIPIISCN QQNLQQLMQS SSGMGFNNDY TDQNRRNTPA 300 FQMQDESKVY PMNNFNQYIS NRSSNQTLES TPLKNEECSD SIIASLQGRT TRDFIDAWSK 360 DGLNDGINNN GSFTSLTLSM SGWNHGMDED NENAQVSINR MLDSERSSDE VLRSQWLNPV 420 SWMSSTAPGG PLGEALCLGN ATNLPSPHGY SNSTANSSCS FNSCENSSHG LDFIG

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MGNGENTELL DLKMKTTESS PSSYPYKRTM FLPPSSHPHF AAFDKETSSN STCLADDGGG  60
GGGGNGDFVG SDSYDAVSSG AAAALSSRPL QPFSCSARGS MFLSGKAPFT ASQLQEFQRQ  120
TIICKYIMAS VPVPPQLLLP LSNNPSSAHL PQSNTSGLDL KFSRGSDPEP WRCKRTDGKK  180
WRCTRDVAPD QKYCERHAHK SKPRSRKPVE IHNTNNNNNN SNNRHPPTPT SRNHHHSFQF  240
PTVQLSDQTR CIEWLGRGDR GGTIPIISCN QQNLQQLMQS SSGMGFNNDY TDQNRRNTPA  300
FQMQDESKVY PMNNFNQYIS NRSSNQTLES TPLKNEECSD SIIASLQGRT TRDFIDAWSK  360
DGLNDGINNN GSFTSLTLSM SGWNHGMDED NENAQVSINR MLDSERSSDE VLRSQWLNPV  420
SWMSSTAPGG PLGEALCLGN ATNLPSPHGY SNSTANSSCS FNSCENSSHG LDFIG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625634.1	0.0	PREDICTED: growth-regulating factor 8
TrEMBL	A0A1S4CWA2	0.0	A0A1S4CWA2_TOBAC; growth-regulating factor 8-like
STRING	XP_009625634.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12517	18	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	7e-27	growth-regulating factor 8