PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009625550.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 326aa MW: 37128.1 Da PI: 7.9793

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009625550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176	1e-54	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv ++++++ +i +vd++kvePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ XP_009625550.1 18 LPPGFRFHPTDEELITHYLSKKVVDTDFSA-IAIGDVDMNKVEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIFR- 110 79***********************999.88***********98999*************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgekt+Wv heyrle XP_009625550.1 111 GKSLVGMKKTLVFYKGRAPKGEKTNWVTHEYRLE 144 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-61	14	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.396	18	168	IPR003441	NAC domain
Pfam	PF02365	6.2E-28	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MENFSGVIKE DDQQQMELPP GFRFHPTDEE LITHYLSKKV VDTDFSAIAI GDVDMNKVEP 60 WELPWKAKIG EKEWYFFCVR DKKYPTGLRT NRATAAGYWK ATGKDKEIFR GKSLVGMKKT 120 LVFYKGRAPK GEKTNWVTHE YRLEGRLSLH NLPKTAKNDW VICRVFQKTT GGKKIHISGL 180 MQSNSTGNEM GNSLLPPLTA SSPSHVHCFS NFLTAQKSEE NMINYFDTSP NFSALSNPMD 240 IFPRNSLPNT FSWNQTVPFP QPGSFPVQDP VSLRNLLENY GQNMQQSLKK EKEMVSISQE 300 TGLSTDMNTE ITSSVVQQDL DCLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-57	6	174	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-57	6	174	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-57	6	174	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-57	6	174	5	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-57	6	174	8	174	NAC domain-containing protein 19
3swm_B	8e-57	6	174	8	174	NAC domain-containing protein 19
3swm_C	8e-57	6	174	8	174	NAC domain-containing protein 19
3swm_D	8e-57	6	174	8	174	NAC domain-containing protein 19
3swp_A	8e-57	6	174	8	174	NAC domain-containing protein 19
3swp_B	8e-57	6	174	8	174	NAC domain-containing protein 19
3swp_C	8e-57	6	174	8	174	NAC domain-containing protein 19
3swp_D	8e-57	6	174	8	174	NAC domain-containing protein 19
4dul_A	6e-57	6	174	5	171	NAC domain-containing protein 19
4dul_B	6e-57	6	174	5	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	4e-58	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625550.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_016463159.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-128	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3ZFN4	0.0	A0A1S3ZFN4_TOBAC; NAC domain-containing protein 100-like
STRING	XP_009625550.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-123	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]