PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625169.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 662aa    MW: 75044 Da    PI: 5.6384
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.97.9e-23125224197
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd+ ++  l++p k a ++      + +k+ + +l+++d+sg++W++k+ + ++++r++lt+GW+ Fv++++L +gD vvF   ++++
  XP_009625169.1 125 FCKVLTASDTKSNWGLSIPQKDAVKCfppldmSRDKPIQ-ELVVKDLSGKEWRFKHVFGGHPRRHLLTNGWSAFVNSKKLVSGDLVVFL--REEN 216
                     99****************************995555564.9************************************************..4467 PP

                     E..EEEEE CS
              B3  90 felvvkvf 97 
                     +  +v+++
  XP_009625169.1 217 GDVHVGFR 224
                     76788876 PP
2Auxin_resp29.72.8e-11250301154
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds 54 
                     a++a++++ +F+v+ +P++  s+F+++++k+++a++  + v m fkm  e  +s
  XP_009625169.1 250 ASDALASQRPFSVYCKPQT--SQFIISLNKYLEAINLGLGVSMTFKMPSEIANS 301
                     567899***********95..9*************************9997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-36118235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-28120225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-20123224No hitNo description
SMARTSM010192.1E-17125227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661125227IPR003340B3 DNA binding domain
PfamPF023626.6E-20125223IPR003340B3 DNA binding domain
PfamPF065078.3E-9250301IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MWSSHPKKQN HIASKGDDDL YRELWKAFAG QSMDVPRVGE QVYYFPGLHI KQLEQSLIQE  60
LNQGTPILDP YLKILCHAVH VRFLVENISE EIYAEINLLP KQDQTEPVNP DFYHSKIPRP  120
QIHSFCKVLT ASDTKSNWGL SIPQKDAVKC FPPLDMSRDK PIQELVVKDL SGKEWRFKHV  180
FGGHPRRHLL TNGWSAFVNS KKLVSGDLVV FLREENGDVH VGFRHLLCQK SSVEAPIASS  240
LDIKGVLAVA SDALASQRPF SVYCKPQTSQ FIISLNKYLE AINLGLGVSM TFKMPSEIAN  300
SHGSFTCMAN EKDQMQINQY SQNANVFLNE DEEHMEDAEA IVYSPPRHST TPSEIGEKRH  360
SDHTIYISPV EGNVESTYEG GTRKHNEVSN PVEIESIRGT EEHKEITTSS WNFNPIQEQE  420
LEDAEIIKDI LPIVSQNLPL DYTVPSNTDN DQFLPIMQDS EEWQNFQGTD FPLHVQPPSG  480
NSSKSMHPTS ISSHIPCDGP SHADEKVHWE GYHVARHYIP ILSRIISQYP STLSSFKATS  540
PIFQSMCLEI LAELVYLLGQ FTTANMDIKY LSEAKRYLRD LKLSGIEIGW LEKRLAKVED  600
IFTMKRISIR RQELVLGIED TTATLRLMNE ELGSLDMELQ KLSSNINLKT PAEERPILDG  660
LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-831829417296Auxin response factor 1
4ldw_A6e-831829417296Auxin response factor 1
4ldw_B6e-831829417296Auxin response factor 1
4ldx_A7e-831829417296Auxin response factor 1
4ldx_B7e-831829417296Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625169.10.0PREDICTED: uncharacterized protein LOC104116082 isoform X2
TrEMBLA0A1S3Z5Y30.0A0A1S3Z5Y3_TOBAC; Auxin response factor
STRINGXP_009625168.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.12e-85auxin response factor 11