PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009625011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 26249.3 Da PI: 6.2489 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.3e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+ +++ lG ++W++ a+ g++R++k+c++rw +yl XP_009625011.1 16 KGPWLEEEDERLASVIAILGERRWDALAKASGLRRSGKSCRLRWMNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 72 | 114 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l+v++ kq+G++ W++I + ++ gRt++++k++w+++l XP_009625011.1 72 ITEDEERLIVQLQKQFGNK-WSKIVKQLP-GRTDNEIKNYWRSHL 114 59*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.287 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.6E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.446 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-13 | 72 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.08E-11 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAFQLQLTMQ EEKLRKGPWL EEEDERLASV IAILGERRWD ALAKASGLRR SGKSCRLRWM 60 NYLRPNLKHG HITEDEERLI VQLQKQFGNK WSKIVKQLPG RTDNEIKNYW RSHLRKKTMI 120 YEQDCSGSNT STNSELKSSF GKDDCSSADS LTEMEVSNYS IDHSSNETRL SDWIPSWTYE 180 QSQMEHHMYL CRLNICSCYP QCFSEDNNSS ISTWDDTSSS IWEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-28 | 14 | 118 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-27 | 14 | 118 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-27 | 14 | 118 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-28 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-28 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-38 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 1e-38 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444726.1 | 1e-158 | PREDICTED: transcription factor MYB48-like | ||||
TrEMBL | A0A1S3XXP8 | 1e-157 | A0A1S3XXP8_TOBAC; transcription factor MYB48-like | ||||
STRING | XP_009625011.1 | 1e-166 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 5e-55 | myb domain protein 27 |