PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009624846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26947.8 Da PI: 9.4682 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.2 | 1.1e-18 | 35 | 81 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie k qvtf k r g++KKA+EL++LCd+e+a+i+fs+ k++ + XP_009624846.1 35 IEVKNHLQVTFLKCRSGLFKKASELCTLCDVEIAIIVFSPVRKVFSF 81 7778889*********************************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-23 | 25 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.226 | 25 | 85 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-23 | 26 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 27 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-20 | 34 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 47 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 62 | 83 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MTTHSRRVDR TCIANARAVA KKPSIGRQKI KNVKIEVKNH LQVTFLKCRS GLFKKASELC 60 TLCDVEIAII VFSPVRKVFS FGHLNVESII DRFLSRNHNP ISNSSLHLIE AHRNASVHEL 120 NLQLTQILAE LEVEKKRGES LDEMRKTNQS QYWWEAPISK LALHELEQLK DSIEVLKKNV 180 TNQASKFMVE TTANSSSYFG VNGNGIFDSY DIKPARNLVA SNNLYNHNFC FDSDGLF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624846.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-55 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S4BLJ9 | 1e-160 | A0A1S4BLJ9_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009624846.1 | 1e-176 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-57 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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