PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009624782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 27597.6 Da PI: 9.914 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.5e-15 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++ ++G +W+ ++ g+ Rt+k+c++rw +yl XP_009624782.1 19 KGAWSPEEDQKLKSYIIRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 66 79******************99************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.263 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.56E-22 | 17 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-22 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-9 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 8.524 | 71 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-4 | 71 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-13 | 74 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.16E-4 | 74 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSSVPQHQQK STNMEEIKKG AWSPEEDQKL KSYIIRYGIW NWSHMPKFAG LSRTGKSCRL 60 RWMNYLRSDV KKGPFTMEER EIVIKLYQEL GTKLPGRSDN DVKNFFYTHL KKHMGMKNDA 120 LLKSKTRRKR VEKPQKSVGK INAEKAQERP VLFLAINNLT IGKSSNNSLT SPDVSSSCSS 180 SIITFGENQK MNIEMENTVI LESNPEIYQS DCLSIESLDQ FDTSSFWFHL LNDAHRLIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-17 | 6 | 112 | 14 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624781.1 | 1e-170 | PREDICTED: transcription factor MYB82-like | ||||
TrEMBL | A0A1S4AKK3 | 1e-159 | A0A1S4AKK3_TOBAC; myb-related protein Myb4-like | ||||
STRING | XP_009624781.1 | 1e-170 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-37 | myb domain protein 15 |