PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009624566.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 268aa MW: 30531.2 Da PI: 7.2356

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009624566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.7e-13	100	151	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ + ++ Lr+llP ++K s ++ +Av+YI +Lq XP_009624566.1 100 KIIHREIERQRRQEMSNLYASLRQLLPLeY---LKGKRSTSDHILEAVNYIEHLQ 151 5669**********************77...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-15	97	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.56E-12	97	155	No hit	No description
PROSITE profile	PS50888	13.745	98	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	101	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-11	101	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-6	104	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDNFHSNVPF QQDDDNDHHQ LLYPPTNTNS SSFLYYQENS TQLQDRVTDL TPFHSLEVDS 60 NNVDLNNTNK INKRRKKSQN SSSAVSLQVD ENTADCKQKK IIHREIERQR RQEMSNLYAS 120 LRQLLPLEYL KGKRSTSDHI LEAVNYIEHL QKKVRKMEDN RDKLKKALSS SDVEHPKSGC 180 SSSAAIIITV RLCLDGMEIL TDCSVTNEGF YISRVLEVLL REGLSIVSCS CNKVNGRLLH 240 TIRTEVCSPS SIDAYELQQK LAATVNSN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624566.1	0.0	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S3XVI9	0.0	A0A1S3XVI9_TOBAC; transcription factor bHLH118-like
STRING	XP_009624566.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12540.1	4e-27	bHLH family protein