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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009624566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 30531.2 Da PI: 7.2356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.7e-13 | 100 | 151 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ + ++ Lr+llP ++K s ++ +Av+YI +Lq XP_009624566.1 100 KIIHREIERQRRQEMSNLYASLRQLLPLeY---LKGKRSTSDHILEAVNYIEHLQ 151 5669************************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-15 | 97 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.56E-12 | 97 | 155 | No hit | No description |
PROSITE profile | PS50888 | 13.745 | 98 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 101 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-11 | 101 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-6 | 104 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MDNFHSNVPF QQDDDNDHHQ LLYPPTNTNS SSFLYYQENS TQLQDRVTDL TPFHSLEVDS 60 NNVDLNNTNK INKRRKKSQN SSSAVSLQVD ENTADCKQKK IIHREIERQR RQEMSNLYAS 120 LRQLLPLEYL KGKRSTSDHI LEAVNYIEHL QKKVRKMEDN RDKLKKALSS SDVEHPKSGC 180 SSSAAIIITV RLCLDGMEIL TDCSVTNEGF YISRVLEVLL REGLSIVSCS CNKVNGRLLH 240 TIRTEVCSPS SIDAYELQQK LAATVNSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624566.1 | 0.0 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A1S3XVI9 | 0.0 | A0A1S3XVI9_TOBAC; transcription factor bHLH118-like | ||||
STRING | XP_009624566.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 4e-27 | bHLH family protein |