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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009624511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 392aa MW: 44416.9 Da PI: 7.8329 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16 | 2.2e-05 | 247 | 353 | 14 | 55 |
HHHHHHHHHHHCTSCCC....................................................................TTS-STCHHH CS HLH 14 driNsafeeLrellPkas.................................................................kapskKlsKaei 43 dr+ s+f+ L+el+ ++s ap +K + a++ XP_009624511.1 247 DRMSSGFAGLQELIHNPSnssnknpvvsnnigvstkakrlscsaenpaqevskkpritsqsstpmlkvrkeklghrisalhrlVAPFGKTDTASV 341 688888888888888877788888888888888888888888888888888888888888888888888888888888888888888******** PP HHHHHHHHHHHH CS HLH 44 LekAveYIksLq 55 L++A+ YI+ Lq XP_009624511.1 342 LTEAIGYIQFLQ 353 ***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.153 | 303 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-6 | 313 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.77E-5 | 313 | 356 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-8 | 313 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MQSANIRWRK CSFEKELNLA IQELFFFPLR YLNNCIQVCG HMDSRNLYHL HQLQQRQLAG 60 YPLFTGVQAL HDWNPSMTSE EEYYYKGEMK RIFQNNISSE ELWKSSSSID TFPLMNSSMF 120 QNGHQSSNEQ LDYKNSKGYI SNDYFLKMKD TNGLSNSLFK ESYFKQEQHH VFDLNENLLS 180 EDHSYMNNAK TCIGFSGLAA AAATPNYISS HLEHSDFQDL KKLGFNGLNF KNSIGDHSTS 240 FGHFCTDRMS SGFAGLQELI HNPSNSSNKN PVVSNNIGVS TKAKRLSCSA ENPAQEVSKK 300 PRITSQSSTP MLKVRKEKLG HRISALHRLV APFGKTDTAS VLTEAIGYIQ FLQDQILDSS 360 IDMKGQAVQD LKSRGLCLVP MSFSSYITYS CD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018632895.1 | 0.0 | PREDICTED: transcription factor bHLH110-like isoform X3 | ||||
TrEMBL | A0A1S4BP27 | 0.0 | A0A1S4BP27_TOBAC; transcription factor bHLH110-like | ||||
STRING | XP_009624505.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 2e-28 | bHLH family protein |