PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624511.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 392aa    MW: 44416.9 Da    PI: 7.8329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-052473531455
                     HHHHHHHHHHHCTSCCC....................................................................TTS-STCHHH CS
             HLH  14 driNsafeeLrellPkas.................................................................kapskKlsKaei 43 
                     dr+ s+f+ L+el+ ++s                                                                  ap +K + a++
  XP_009624511.1 247 DRMSSGFAGLQELIHNPSnssnknpvvsnnigvstkakrlscsaenpaqevskkpritsqsstpmlkvrkeklghrisalhrlVAPFGKTDTASV 341
                     688888888888888877788888888888888888888888888888888888888888888888888888888888888888888******** PP

                     HHHHHHHHHHHH CS
             HLH  44 LekAveYIksLq 55 
                     L++A+ YI+ Lq
  XP_009624511.1 342 LTEAIGYIQFLQ 353
                     ***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.153303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-6313356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-5313356No hitNo description
SuperFamilySSF474591.44E-8313357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MQSANIRWRK CSFEKELNLA IQELFFFPLR YLNNCIQVCG HMDSRNLYHL HQLQQRQLAG  60
YPLFTGVQAL HDWNPSMTSE EEYYYKGEMK RIFQNNISSE ELWKSSSSID TFPLMNSSMF  120
QNGHQSSNEQ LDYKNSKGYI SNDYFLKMKD TNGLSNSLFK ESYFKQEQHH VFDLNENLLS  180
EDHSYMNNAK TCIGFSGLAA AAATPNYISS HLEHSDFQDL KKLGFNGLNF KNSIGDHSTS  240
FGHFCTDRMS SGFAGLQELI HNPSNSSNKN PVVSNNIGVS TKAKRLSCSA ENPAQEVSKK  300
PRITSQSSTP MLKVRKEKLG HRISALHRLV APFGKTDTAS VLTEAIGYIQ FLQDQILDSS  360
IDMKGQAVQD LKSRGLCLVP MSFSSYITYS CD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018632895.10.0PREDICTED: transcription factor bHLH110-like isoform X3
TrEMBLA0A1S4BP270.0A0A1S4BP27_TOBAC; transcription factor bHLH110-like
STRINGXP_009624505.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-28bHLH family protein