PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624505.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 412aa    MW: 46643.6 Da    PI: 8.5255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-052473531455
                     HHHHHHHHHHHCTSCCC....................................................................TTS-STCHHH CS
             HLH  14 driNsafeeLrellPkas.................................................................kapskKlsKaei 43 
                     dr+ s+f+ L+el+ ++s                                                                  ap +K + a++
  XP_009624505.1 247 DRMSSGFAGLQELIHNPSnssnknpvvsnnigvstkakrlscsaenpaqevskkpritsqsstpmlkvrkeklghrisalhrlVAPFGKTDTASV 341
                     688888888888888877788888888888888888888888888888888888888888888888888888888888888888888******** PP

                     HHHHHHHHHHHH CS
             HLH  44 LekAveYIksLq 55 
                     L++A+ YI+ Lq
  XP_009624505.1 342 LTEAIGYIQFLQ 353
                     ***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.153303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-9313365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-6313361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-5313356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MQSANIRWRK CSFEKELNLA IQELFFFPLR YLNNCIQVCG HMDSRNLYHL HQLQQRQLAG  60
YPLFTGVQAL HDWNPSMTSE EEYYYKGEMK RIFQNNISSE ELWKSSSSID TFPLMNSSMF  120
QNGHQSSNEQ LDYKNSKGYI SNDYFLKMKD TNGLSNSLFK ESYFKQEQHH VFDLNENLLS  180
EDHSYMNNAK TCIGFSGLAA AAATPNYISS HLEHSDFQDL KKLGFNGLNF KNSIGDHSTS  240
FGHFCTDRMS SGFAGLQELI HNPSNSSNKN PVVSNNIGVS TKAKRLSCSA ENPAQEVSKK  300
PRITSQSSTP MLKVRKEKLG HRISALHRLV APFGKTDTAS VLTEAIGYIQ FLQDQILTLS  360
MPYAKSSKGK LHQINLKDSS IDMKGQAVQD LKSRGLCLVP MSFSSYITYS CD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624505.10.0PREDICTED: transcription factor bHLH110-like isoform X2
TrEMBLA0A1S4BP270.0A0A1S4BP27_TOBAC; transcription factor bHLH110-like
STRINGXP_009624505.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134431213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-34bHLH family protein