PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009624047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 437aa MW: 48811.2 Da PI: 6.8687 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.3 | 7e-07 | 193 | 214 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_009624047.1 193 FCTICGKGFKRDANLRMHMRGH 214 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.78E-5 | 190 | 217 | No hit | No description |
SMART | SM00355 | 0.0026 | 192 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.03 | 192 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 193 | 240 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 194 | 214 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 242 | 275 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 33 | 280 | 302 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEQQVNQRSE NHDFTRRQDW DPKAMLNNMS FLEQKIHQLQ ELVRIIVDHR SLAGIQGNDL 60 SIQQQQLIIA DLTSIIVQLI STAGSLLPTV KHHTLSSASP TTKQPAQFGG VWVPSGKVID 120 AGALPHSVNV TKAEDQPNHV DLMGDCGIVQ KYDVDEHEAK DEDEFHDEEN LPPGSYEILQ 180 LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT PAALAKPHKD PSSGTMTLIK 240 RYSCPCVGCK RNKEHKRFQP LKTILCVKNH YKRTHCEKSY ACSRCNLKKF SVIADLRTHE 300 KHCGIDKWLC SCGTTFSRKD KLFGHISLFQ GHTPAIPLDE TKGFAGTSDQ GQIGKATTEA 360 GEIGFELNVQ NGSGLQNTIN VKEDADNPGS YLSPLNIETC KLSELQEFPQ PPFEDPENSF 420 SFLLSGSCNY PQRAGKI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624046.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Refseq | XP_009624047.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 1e-165 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A1S4ANI8 | 0.0 | A0A1S4ANI8_TOBAC; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | XP_009624046.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-161 | C2H2 family protein |