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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009623949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 32045.8 Da PI: 6.5088 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.8e-08 | 164 | 204 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L XP_009623949.1 164 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 204 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.926 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-14 | 160 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-12 | 161 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.06E-11 | 161 | 209 | No hit | No description |
Pfam | PF00010 | 8.4E-6 | 165 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MDINHHLKLT TSTWQPTMAN IDNHIFDDHH HHHHQQQQQQ LQQRQFSFDQ NPIWPSFPLQ 60 NPHHHLPSFS SELQQQQQQQ QQRQQQQVPF DHAVNNHVQT LIEDHNDQEP EDDEEEEEEE 120 ELGAMKEMMF KIAAMQPVDI DPATIRKPKR RNVRISNDPQ SVAARLRRER ISEKIRILQR 180 LVPGGTKMDT ASMLDEAIRY VKFLKRQIRQ LQLPNHHLPP SHVPTVPCPS TENWANIITP 240 TKALILGSSS ITTTTIATAT TFVGNNASDP TYEVIGN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 169 | RLRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623949.1 | 0.0 | PREDICTED: transcription factor HEC3-like | ||||
TrEMBL | A0A314L5V8 | 1e-146 | A0A314L5V8_NICAT; Transcription factor hec3 | ||||
STRING | XP_009623949.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 3e-45 | bHLH family protein |