PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623949.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 277aa    MW: 32045.8 Da    PI: 6.5088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08164204954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_009623949.1 164 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 204
                     699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-14160222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.06E-11161209No hitNo description
PfamPF000108.4E-6165204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDINHHLKLT TSTWQPTMAN IDNHIFDDHH HHHHQQQQQQ LQQRQFSFDQ NPIWPSFPLQ  60
NPHHHLPSFS SELQQQQQQQ QQRQQQQVPF DHAVNNHVQT LIEDHNDQEP EDDEEEEEEE  120
ELGAMKEMMF KIAAMQPVDI DPATIRKPKR RNVRISNDPQ SVAARLRRER ISEKIRILQR  180
LVPGGTKMDT ASMLDEAIRY VKFLKRQIRQ LQLPNHHLPP SHVPTVPCPS TENWANIITP  240
TKALILGSSS ITTTTIATAT TFVGNNASDP TYEVIGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623949.10.0PREDICTED: transcription factor HEC3-like
TrEMBLA0A314L5V81e-146A0A314L5V8_NICAT; Transcription factor hec3
STRINGXP_009623949.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-45bHLH family protein