PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623868.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 496aa    MW: 55298.7 Da    PI: 6.7397
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17159208155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009623868.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                     78*******************......55************************997 PP
2AP241.14.3e-13251301155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_009623868.1 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 301
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-9159208IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-16159217IPR016177DNA-binding domain
PROSITE profilePS5103217.794160216IPR001471AP2/ERF domain
SMARTSM003801.3E-32160222IPR001471AP2/ERF domain
CDDcd000182.58E-11160218No hitNo description
Gene3DG3DSA:3.30.730.103.6E-17160217IPR001471AP2/ERF domain
CDDcd000181.78E-25251311No hitNo description
SuperFamilySSF541718.5E-17251310IPR016177DNA-binding domain
PfamPF008471.3E-8251301IPR001471AP2/ERF domain
SMARTSM003802.5E-32252315IPR001471AP2/ERF domain
PROSITE profilePS5103215.527252309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15252309IPR001471AP2/ERF domain
PRINTSPR003675.4E-6253264IPR001471AP2/ERF domain
PRINTSPR003675.4E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMLDLNLSAI YDEKVLEGSV VDESGTSNSS ARNAEASSSA GDDDTCSTRA GDMFAFNFDF  60
LKVGGAETSR SCSNNDDDQD GYDENRRVTQ SEFVTRQLFP LDRSHTSRKP DWVDPSFDPP  120
NTVSFREAEI VRAQQQYQQH QQQQQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFNLSDY EEDMKQMKSL GKEEFVHVLR  240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN  300
GREAVTNFEP STYEGETHSD PQSAGSQQDL DLNLGIATSS PKENERMGSF QYHPYDMQDA  360
TKSQMDKSCP AIVGSSHFKA QPVTSEQAHV WNGVYSNFFP SYEERASGKR IDIGSSQGRP  420
NWALQMHGQV GTTPMSMFTA AASSGFSTPA TTASASPMSG PNPNTSTPNL PFASYSTPST  480
NTTQYYYQIR PPLPPP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623868.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AXC31e-107AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1S4C3J30.0A0A1S4C3J3_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X1
STRINGXP_009623868.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-115related to AP2.7