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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009623799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 476aa MW: 53803.6 Da PI: 4.8491 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.3 | 3.2e-14 | 275 | 321 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR ++N+++ Lr+++P++ K++ a+i++ A+eYI++L XP_009623799.1 275 TKHFATERQRRVHLNDKYKALRSMVPNP-----SKNDRASIVKDAIEYINEL 321 78*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-15 | 268 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.218 | 272 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-12 | 275 | 326 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 275 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-12 | 275 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-11 | 278 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MYVESDCFDP AASVQHEGLA EDVFEIEENT YNNSSQQNAA FVAAAALEMQ LQQQLNLEME 60 QCYNTTHNNN SMQELVHEHN NQGISCDQSN WGEMSFPPYQ NQEDNNNFQH VAHDIQNGHQ 120 QQNFPNSLPE APYNLPTPDL LNMFPLPRSS ISFTNTNTTQ SSNLLTSLGL LGDINIPAAD 180 GASTTSAVYD HSLLPLNLPP QPPLLRELFH SFPHDYGLGN LRSNTSSFFN GLEERDQLSG 240 ALYQDGEERP FDNRIFEFSA DMNGIAKNRD IGKDTKHFAT ERQRRVHLND KYKALRSMVP 300 NPSKNDRASI VKDAIEYINE LKREVHDLEV MVEKKRCNRD RIKRQKTKEG GNSMDGTDAK 360 QMDEVDQSYN GNSLRSSWLQ RRSKNTEVDV RVVDDEVTVK VVQQKRINCL LFASKVLDDL 420 QLDLHHVAGG LIGDYYSFLF NSKICEGSTV YASAIAKKLI EVVDIQYAAI APTNSY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623799.1 | 0.0 | PREDICTED: transcription factor bHLH91-like | ||||
TrEMBL | A0A1S3ZPZ5 | 0.0 | A0A1S3ZPZ5_TOBAC; transcription factor bHLH91-like | ||||
STRING | XP_009623799.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2696 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 4e-57 | bHLH family protein |