PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623741.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 522aa MW: 58243.2 Da PI: 4.1944

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.3e-08	260	307	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE+el+ ++v + W+ a +++ R++k+++s+++++ XP_009623741.1 260 KWSEEEEELFHEVVLSNPASlgknFWNHLAIEFP-SRSRKELVSYYFNV 307 8***********6654445555******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-4	255	318	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-4	257	310	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-7	260	307	IPR001005	SANT/Myb domain
CDD	cd00167	0.00154	260	308	No hit	No description
PROSITE profile	PS50090	6.168	260	308	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MVQKRSYGEE ELYEVSSKQP RHEPSCQLVS VLELSRESVA VKAYASGGDE ENSSRTNADS 60 KPDSHNVAEA LFSSEKETEM GIYGSASNSS WPTSCTSEED IRPEARFHIL MSPEYYYFDN 120 PFRAAAHHGE MHSSLLCDPP QKMVPIGPDF QAELPEWVAF GNQDKLYVEG IHETLCPSSQ 180 ADENKLAGTS IITMPAMELC ADHGENIVER GGECPCEDIG SIRCVRLHIM ETREKLKLDL 240 GEETFVRLGF CDMGEVVAEK WSEEEEELFH EVVLSNPASL GKNFWNHLAI EFPSRSRKEL 300 VSYYFNVFIL RKRAEQNRFD PLNIDSDNDE WLEIVGDADQ EANMTDEDEE SVVESPAYHN 360 DLSGNGIHEE LDKHHEDVGD ATWEDYKAVN VCSTKVFTDV PESCPGELFD SNSSYKLSLQ 420 PQDQGLSNKV VKQEVQDGSC TTVAAGVTSE SSLGQTNNGK CWANDITGMG SGTEHDRVFG 480 PCSCKEWDVG YLSCCARNEV DLLPTCTMIE EVFGDGAWIY KS

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MVQKRSYGEE ELYEVSSKQP RHEPSCQLVS VLELSRESVA VKAYASGGDE ENSSRTNADS  60
KPDSHNVAEA LFSSEKETEM GIYGSASNSS WPTSCTSEED IRPEARFHIL MSPEYYYFDN  120
PFRAAAHHGE MHSSLLCDPP QKMVPIGPDF QAELPEWVAF GNQDKLYVEG IHETLCPSSQ  180
ADENKLAGTS IITMPAMELC ADHGENIVER GGECPCEDIG SIRCVRLHIM ETREKLKLDL  240
GEETFVRLGF CDMGEVVAEK WSEEEEELFH EVVLSNPASL GKNFWNHLAI EFPSRSRKEL  300
VSYYFNVFIL RKRAEQNRFD PLNIDSDNDE WLEIVGDADQ EANMTDEDEE SVVESPAYHN  360
DLSGNGIHEE LDKHHEDVGD ATWEDYKAVN VCSTKVFTDV PESCPGELFD SNSSYKLSLQ  420
PQDQGLSNKV VKQEVQDGSC TTVAAGVTSE SSLGQTNNGK CWANDITGMG SGTEHDRVFG  480
PCSCKEWDVG YLSCCARNEV DLLPTCTMIE EVFGDGAWIY KS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623741.1	0.0	PREDICTED: uncharacterized protein LOC104114899 isoform X2
Refseq	XP_016470365.1	0.0	PREDICTED: uncharacterized protein LOC107792646
TrEMBL	A0A1S4A190	0.0	A0A1S4A190_TOBAC; uncharacterized protein LOC107792646
STRING	XP_009623741.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25