PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009623735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 325aa MW: 36782.4 Da PI: 6.1148 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.6e-39 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++ +++am+++++++++ra+dPv G++++i++lq++++ kael+ XP_009623735.1 61 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDYCKAELD 155 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_009623735.1 156 IVLHQ 160 88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.198 | 60 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-36 | 61 | 156 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MQNQMTTIST PIPNHPHTIH TTFTTANNLN HNYSTKRVNN NNNNNNKNKN VLLRVNGAGQ 60 ACAACKYQRR KCAPDCVLAP YFPHDRQRQF LNAHKLFGVS NITKIIRHLD QPLKDEAMRT 120 IIFQSDVRAN DPVGGCYRII RDLQRHIDYC KAELDIVLHQ LAYCRAQAVA AAASEQQILA 180 DHHATEESFN DNNCDGVVNQ ADPLVNNNAS SYDQQTVDYH PHSYYNHTSC QKGEDDQQYD 240 EIQDGQLDLA DINFPWSLHE QESTSTSAPN SLMKQLSVYD QCDNIKPILE GISGFGGEGL 300 SFEHDQAFDQ HSYSTREHSP IEGRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-27 | 57 | 155 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-27 | 57 | 155 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-178 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623735.1 | 0.0 | PREDICTED: LOB domain-containing protein 22 | ||||
TrEMBL | A0A1S3XPA6 | 0.0 | A0A1S3XPA6_TOBAC; LOB domain-containing protein 22-like | ||||
STRING | XP_009623735.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9926 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-52 | LOB domain-containing protein 22 |