PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623662.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 307aa    MW: 34081.3 Da    PI: 5.4114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12116163355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +Er+RR+r  + f+ L + +P +     kKl+Ka+iLe  ++YI +Lq
  XP_009623662.1 116 QDHLLAERKRRERFTQLFAVLAKSIPDL-----KKLDKASILEDSIKYIGELQ 163
                     668899**********************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-10116163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-14117172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-11118167No hitNo description
SuperFamilySSF474597.98E-14118175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MENASFNNLE NTAGGEEPFE FKNLLSEMFT SYPNQNPSSS SLMEIPKIAF SSSPNSSTST  60
NSSSSSPNII SFGNPDSNFL GDELDYDMIS EKVISQSSSP TTSMPKRICR SPLQSQDHLL  120
AERKRRERFT QLFAVLAKSI PDLKKLDKAS ILEDSIKYIG ELQGRVRALE EAGTTKSRNL  180
IESTSTVQKQ YSFAATTSDD NSILAKNFDE SKPDQNDIKV QILDKNVLIG IHCSKEMRSI  240
FTIIAGIMEK LHLTIHHIRV TPSNHIALHY ISVLAEIDQN VDIRVQDVEN AFKFALPSTS  300
NMPGLAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755185e-54HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623662.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_016434421.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S3X3M00.0A0A1S3X3M0_TOBAC; transcription factor bHLH18-like
STRINGXP_009623662.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125981122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-23bHLH family protein