PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009623517.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 913aa MW: 101706 Da PI: 7.0512

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.9e-29	594	644	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_009623517.1 594 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 644 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	5.6E-4	187	271	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.427	583	664	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	597	644	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.0E-22	806	901	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.9E-21	814	896	No hit	No description
Pfam	PF00564	2.9E-17	816	897	IPR000270	PB1 domain
SMART	SM00666	4.4E-23	816	898	IPR000270	PB1 domain
PROSITE profile	PS51745	21.063	816	898	IPR000270	PB1 domain
CDD	cd06407	4.46E-38	817	897	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MEDGPFTLHD MFAKLSSDNT IATSDFSEFL SDGFWLETTN HASNFLTPSS LASQPLLLDT 60 TKAGHFLPTT DQLTLQEETD KDKILFAQMD DFSPTRRENS ETSPRRLWIG PNINPNPTLS 120 VKKRLVQAIE HLKDSTRDKD VLIQIWVPVK RGGKHVLITN NQPYFLNPNF QSLVEYRYVS 180 QNYQFAAEKD SKELVGLPGR VFLKKLPEWT PDVRFFKREE YPRVNHAHQY NVRGSIAVPV 240 FETGSGTCLG VVEIVTTTQK THYHPELEDV CKALEAVNLR SSGISNPAKI KDCNESYLAA 300 LAEIQYILTC VCDTHKLPLA QTWAPCIQQG KGGCLRDENF TFCVTTVDEA CYVRDPQVLP 360 FHYACSEHHL LKGEGVAGGA FNTNQPCFAT DITAFSKTEY PLSHHARMFG LCSAVAIRLR 420 SIYTGSADFV LEFFLPLDCK NTEDQKQMLS SLSSVIQQSC RSLRVVTDQE LQEEKELLQR 480 EKVILSAGES HEEISRKPVS PPYGDQDASS WLSQMMDSQR KGKGAAVSQE ENFKVTANHW 540 RESIHASTYS EPNQIQDNFG PNGGSGGSLD FSSGTGSHSS GAKRAGERRR SKTEKSISLQ 600 VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK IKKVGHSLQK LQLVIDSVHG 660 AEGAIKLSSF YTNFPELTSP NNPGTSNLSA SKNHDHLQQV NTQPDGSALS PVTTTSKSTS 720 SSGSHNSSSS LFCSTDSKHL FPLTNVFATG NATMEEHPGG MLKRAHTEAE LHDMGQEETK 780 LLVRSQSQKI QSNHISLEPL CPLPTSSNQV IRDSATFKVK ATFGKEKIRF SLQSHWGFID 840 VQQEVLRRFN IEDGKIDLKY LDDDDEWVLL TCDADLEECI DIHRLCKRRT IKVSLHHAYH 900 PNLGSSFGSS GPA

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MEDGPFTLHD MFAKLSSDNT IATSDFSEFL SDGFWLETTN HASNFLTPSS LASQPLLLDT  60
TKAGHFLPTT DQLTLQEETD KDKILFAQMD DFSPTRRENS ETSPRRLWIG PNINPNPTLS  120
VKKRLVQAIE HLKDSTRDKD VLIQIWVPVK RGGKHVLITN NQPYFLNPNF QSLVEYRYVS  180
QNYQFAAEKD SKELVGLPGR VFLKKLPEWT PDVRFFKREE YPRVNHAHQY NVRGSIAVPV  240
FETGSGTCLG VVEIVTTTQK THYHPELEDV CKALEAVNLR SSGISNPAKI KDCNESYLAA  300
LAEIQYILTC VCDTHKLPLA QTWAPCIQQG KGGCLRDENF TFCVTTVDEA CYVRDPQVLP  360
FHYACSEHHL LKGEGVAGGA FNTNQPCFAT DITAFSKTEY PLSHHARMFG LCSAVAIRLR  420
SIYTGSADFV LEFFLPLDCK NTEDQKQMLS SLSSVIQQSC RSLRVVTDQE LQEEKELLQR  480
EKVILSAGES HEEISRKPVS PPYGDQDASS WLSQMMDSQR KGKGAAVSQE ENFKVTANHW  540
RESIHASTYS EPNQIQDNFG PNGGSGGSLD FSSGTGSHSS GAKRAGERRR SKTEKSISLQ  600
VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK IKKVGHSLQK LQLVIDSVHG  660
AEGAIKLSSF YTNFPELTSP NNPGTSNLSA SKNHDHLQQV NTQPDGSALS PVTTTSKSTS  720
SSGSHNSSSS LFCSTDSKHL FPLTNVFATG NATMEEHPGG MLKRAHTEAE LHDMGQEETK  780
LLVRSQSQKI QSNHISLEPL CPLPTSSNQV IRDSATFKVK ATFGKEKIRF SLQSHWGFID  840
VQQEVLRRFN IEDGKIDLKY LDDDDEWVLL TCDADLEECI DIHRLCKRRT IKVSLHHAYH  900
PNLGSSFGSS GPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	883	892	RLCKRRTIKV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240198	0.0	AC240198.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-219g5 map 1, complete sequence.
GenBank	AC246586	0.0	AC246586.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-20o20 map 1, complete sequence.
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623517.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_016493353.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_018632685.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A1S4BWX7	0.0	A0A1S4BWX7_TOBAC; protein NLP2-like
STRING	XP_009623517.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein