PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623477.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 433aa MW: 49280.8 Da PI: 6.0145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	151	174	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H XP_009623477.1 151 YICSVCGRKCKTNLDLKKHFKQlH 174 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	8.1E-7	71	141	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.907	151	179	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0051	151	174	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	153	174	IPR007087	Zinc finger, C2H2
CDD	cd06167	2.58E-12	165	305	No hit	No description
Gene3D	G3DSA:3.40.50.1010	8.1E-7	236	306	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MLMSSIFSSI HLKTSSFFPT PLPTNHQNPF PLTFSFKPNS PIAPIKWHIS SCAAGQEIDM 60 ERTKEGLYTA KPKKVVILWD LDNKPPRGPP YEAAMSLKKV AQFFGEVVDM SAYANRHAFI 120 HLPQWVAEQR RERRHLDVLE RKGAVTPSEP YICSVCGRKC KTNLDLKKHF KQLHERERQK 180 KLSRMRSLKG KKRQKFKERH VDGNYKYIEA ARSLITPKVG YGLAAELRRA GVFVKTVADK 240 PQAADWALKK QMQHSMTRGI DWLFLVSDDS DFCDMLRRAK EANLGTVVVG DMDRALGRHA 300 DLWIPWNGVE NGEIKEKDLV LKLERRRESW GRSNARFSVS EFDGGISGEG TSVGSLMDDI 360 VEKLELSGTR ISAFSEGEED EDVEELDEED WLGARLDQPG DDKYDTEDSL LDSEDEEGDY 420 LLDSDDEDPG QMV

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MLMSSIFSSI HLKTSSFFPT PLPTNHQNPF PLTFSFKPNS PIAPIKWHIS SCAAGQEIDM  60
ERTKEGLYTA KPKKVVILWD LDNKPPRGPP YEAAMSLKKV AQFFGEVVDM SAYANRHAFI  120
HLPQWVAEQR RERRHLDVLE RKGAVTPSEP YICSVCGRKC KTNLDLKKHF KQLHERERQK  180
KLSRMRSLKG KKRQKFKERH VDGNYKYIEA ARSLITPKVG YGLAAELRRA GVFVKTVADK  240
PQAADWALKK QMQHSMTRGI DWLFLVSDDS DFCDMLRRAK EANLGTVVVG DMDRALGRHA  300
DLWIPWNGVE NGEIKEKDLV LKLERRRESW GRSNARFSVS EFDGGISGEG TSVGSLMDDI  360
VEKLELSGTR ISAFSEGEED EDVEELDEED WLGARLDQPG DDKYDTEDSL LDSEDEEGDY  420
LLDSDDEDPG QMV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018632670.1	0.0	PREDICTED: uncharacterized protein LOC104114682
TrEMBL	A0A1S4BVD1	0.0	A0A1S4BVD1_TOBAC; uncharacterized protein LOC107812283
STRING	XP_009623477.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12268	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-164	C2H2-like zinc finger protein