PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623377.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 163aa MW: 18817.6 Da PI: 9.7907

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.8	2.9e-23	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rq t+skR+ i KKA+EL vLCd++va+++fs+tg+l yss XP_009623377.1 9 KKIENSTSRQQTYSKRKDSIVKKANELAVLCDTDVALLMFSPTGQLTSYSS 59 68***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.0E-29	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.301	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.85E-26	2	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-20	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MGRNKLVMKK IENSTSRQQT YSKRKDSIVK KANELAVLCD TDVALLMFSP TGQLTSYSSR 60 GSVEDIMLRV VNRPGELHRR PIPNEQYFSQ RLAQLKYESE MVEKIAIAEA HEEKLNKLNQ 120 RLSEARENIR YYEPQAEGIN SVHKAVACQQ FLMSAMERIQ QLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623377.2	1e-118	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
Refseq	XP_016487647.1	1e-118	PREDICTED: agamous-like MADS-box protein AGL66
Refseq	XP_016487648.1	1e-118	PREDICTED: agamous-like MADS-box protein AGL66
Refseq	XP_016487649.1	1e-118	PREDICTED: agamous-like MADS-box protein AGL66
Refseq	XP_018632546.1	1e-118	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
Refseq	XP_018632551.1	1e-118	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
TrEMBL	A0A1S4BFI0	1e-117	A0A1S4BFI0_TOBAC; agamous-like MADS-box protein AGL66
STRING	XP_009623377.1	1e-118	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5292	18	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	6e-30	AGAMOUS-like 67