PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009622916.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 767aa MW: 87164 Da PI: 5.968

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009622916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	378.2	1e-115	394	765	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla++f+ +++arla+++s++ykal ++ts ++ l+a++l+ sP+ k+s XP_009622916.1 394 LRTLLINCAQAVAADDCRSATELLKQIRLHSSPFGDGNQRLAHCFADGMEARLAGTGSQIYKALVNKKTS---AADFLKAYHLYLASSPFRKLSD 485 6789**********************************************************999999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N++I+ + ++ rvH+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+++ +ak++e+ XP_009622916.1 486 FASNKTIMTKAGNAARVHVIDFGILYGFQWPTLIQRIAAREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYAQTFNVPFEYHA-IAKKWET 579 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + ++++ F++rf e l ++salfd+lea++pres er+ XP_009622916.1 580 IRLEDLKLEKDEFLVVNCLYRFKNLPDETVLTDSSRTLVLDLIRKINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVPRESPERM 674 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere++gre+ nv+aceg er+er et+++W+ r +a F ++p++ ++++ a + + + + ++e++++l+lgWk+r+++++S+W+ XP_009622916.1 675 LIEREIFGREALNVIACEGWERVERPETYKQWQVRNLRARFMQIPFEREVMNRATEKVTSSYHKDFVLDENNKWLLLGWKGRTIYALSCWK 765 *******************************************************999888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.668	368	745	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-113	394	765	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MDPRFNNFPT SMNGFSLENQ SVHISSNRWK NNEPRFEAIY QDQKLVNGPR FENNFVPKNI 60 GGIQSVSNDP LPTSNIALTS DIGAEDEYNE DFDFSDTVLS YINQMLMEED VEDKTHMLQE 120 SLEFQAKEKS FYEALSKEYP PSPQQNLSIT YQNGEIPNEY CSGSLYNFTS NSNDSSDYLT 180 DPTVINISND LKSSYVQGLS VCNGTYSSIS SSSSINNIVD GFLDSPVSPL HNPDIYNDSY 240 PIWNFRKGVE EANKFLPTNI KLLDNVDING LLPLEKRGES GCVAARVEKR DEGEVSPTEP 300 RGRKNPHRDD KDLLEEERSS KQAAVYTEST VRSEEFDIVL LHSLGNGKEA LEAYRESLKN 360 ARTKNTVQNG QSKGYNGGKG RGKKHSGKKE VVDLRTLLIN CAQAVAADDC RSATELLKQI 420 RLHSSPFGDG NQRLAHCFAD GMEARLAGTG SQIYKALVNK KTSAADFLKA YHLYLASSPF 480 RKLSDFASNK TIMTKAGNAA RVHVIDFGIL YGFQWPTLIQ RIAAREGGPP KLRITGIEFP 540 QPGFRPAERI EETGRRLADY AQTFNVPFEY HAIAKKWETI RLEDLKLEKD EFLVVNCLYR 600 FKNLPDETVL TDSSRTLVLD LIRKINPDIF IHGIVNGAYS APFFVTRFRE VLFHFSALFD 660 MLEANVPRES PERMLIEREI FGREALNVIA CEGWERVERP ETYKQWQVRN LRARFMQIPF 720 EREVMNRATE KVTSSYHKDF VLDENNKWLL LGWKGRTIYA LSCWKPI

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MDPRFNNFPT SMNGFSLENQ SVHISSNRWK NNEPRFEAIY QDQKLVNGPR FENNFVPKNI  60
GGIQSVSNDP LPTSNIALTS DIGAEDEYNE DFDFSDTVLS YINQMLMEED VEDKTHMLQE  120
SLEFQAKEKS FYEALSKEYP PSPQQNLSIT YQNGEIPNEY CSGSLYNFTS NSNDSSDYLT  180
DPTVINISND LKSSYVQGLS VCNGTYSSIS SSSSINNIVD GFLDSPVSPL HNPDIYNDSY  240
PIWNFRKGVE EANKFLPTNI KLLDNVDING LLPLEKRGES GCVAARVEKR DEGEVSPTEP  300
RGRKNPHRDD KDLLEEERSS KQAAVYTEST VRSEEFDIVL LHSLGNGKEA LEAYRESLKN  360
ARTKNTVQNG QSKGYNGGKG RGKKHSGKKE VVDLRTLLIN CAQAVAADDC RSATELLKQI  420
RLHSSPFGDG NQRLAHCFAD GMEARLAGTG SQIYKALVNK KTSAADFLKA YHLYLASSPF  480
RKLSDFASNK TIMTKAGNAA RVHVIDFGIL YGFQWPTLIQ RIAAREGGPP KLRITGIEFP  540
QPGFRPAERI EETGRRLADY AQTFNVPFEY HAIAKKWETI RLEDLKLEKD EFLVVNCLYR  600
FKNLPDETVL TDSSRTLVLD LIRKINPDIF IHGIVNGAYS APFFVTRFRE VLFHFSALFD  660
MLEANVPRES PERMLIEREI FGREALNVIA CEGWERVERP ETYKQWQVRN LRARFMQIPF  720
EREVMNRATE KVTSSYHKDF VLDENNKWLL LGWKGRTIYA LSCWKPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-50	400	766	25	380	Protein SCARECROW
5b3h_A	7e-50	400	766	24	379	Protein SCARECROW
5b3h_D	7e-50	400	766	24	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622916.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_009622917.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1S4AD23	0.0	A0A1S4AD23_TOBAC; scarecrow-like protein 9
STRING	XP_009622916.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein