PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009622905.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 327aa MW: 37153.5 Da PI: 8.0453

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009622905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.9	2.7e-55	10	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +k++++++ ++++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ XP_009622905.1 10 LPPGFRFHPTDEELITYYLVNKISDSTNFTARAIGDVDLNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 104 79**********************9777799***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfy+grap+gekt+Wvmheyr+ XP_009622905.1 105 sTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 138 78889*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-63	7	160	IPR003441	NAC domain
PROSITE profile	PS51005	62.141	10	160	IPR003441	NAC domain
Pfam	PF02365	1.0E-28	11	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEDEVKEETL PPGFRFHPTD EELITYYLVN KISDSTNFTA RAIGDVDLNK SEPWDLPGKA 60 KMGEKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IFNSSTSELV GMKKTLVFYR 120 GRAPRGEKTN WVMHEYRIHS KSSYRTHKQD EWVVCRVFQK SAGGKKYPCN NSRSVNMNPY 180 TLEINPSTMS SQIIQADHIQ GFQLAMGRGY MNHADAEIQE FNRVFRGGSS SSNMSFPVQS 240 QMNYSNLGGG GGNYFTISGL NLNLGSDATT SQPTLRPMLP PQVMNQQDMM TTEAGYGSDM 300 NNSGNTMNRF MAVENCADNL ENYWSPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-56	3	166	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-56	3	166	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-56	3	166	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-56	3	166	10	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-56	3	166	13	174	NAC domain-containing protein 19
3swm_B	3e-56	3	166	13	174	NAC domain-containing protein 19
3swm_C	3e-56	3	166	13	174	NAC domain-containing protein 19
3swm_D	3e-56	3	166	13	174	NAC domain-containing protein 19
3swp_A	3e-56	3	166	13	174	NAC domain-containing protein 19
3swp_B	3e-56	3	166	13	174	NAC domain-containing protein 19
3swp_C	3e-56	3	166	13	174	NAC domain-containing protein 19
3swp_D	3e-56	3	166	13	174	NAC domain-containing protein 19
4dul_A	3e-56	3	166	10	171	NAC domain-containing protein 19
4dul_B	3e-56	3	166	10	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622905.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	6e-82	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3Z3T4	0.0	A0A1S3Z3T4_TOBAC; NAC domain-containing protein 92-like
STRING	XP_009622905.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-114	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]