PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622698.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 379aa    MW: 42499 Da    PI: 6.9429
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32243298156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rFv+a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQk+Rl+
  XP_009622698.1 243 KQRRCWSPELHRRFVDALHQLGGPQVATPKQIREIMQVDGLTNDEVKSHLQKFRLH 298
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.327240300IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-29240301IPR009057Homeodomain-like
SuperFamilySSF466891.18E-17241301IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-26243298IPR006447Myb domain, plants
PfamPF002494.0E-7245295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGSSSKELNL DLNCVYVPKI ISDVLTEVSA IDDISKKLSK LNHFVLSLEE ELKKIEAFKR  60
ELPLCMVLLK DAIERLKEEA LQYKGKGKRP VMEEFIPLKS NSNESGRVKM SNDISDKKKW  120
MSSAQLWSTP VHYESIDLGK QGQFLQLKSS GVEGRDRENE FKLGIYKLKN DRGAFMPFQE  180
NSVRSVKDEK NGKPVNDLSL CMAVGEREEG PNPVDVSVKI DNGGGRSNGC SSNFLQDKSQ  240
QRKQRRCWSP ELHRRFVDAL HQLGGPQVAT PKQIREIMQV DGLTNDEVKS HLQKFRLHVR  300
RVPVSGCSWS TMDEIGESSK TNATQSGSPE GPLHFTGSGS AKGVSINEGE TMEENEEEDN  360
KSESYTWNGQ IPKSIEAHV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622698.10.0PREDICTED: myb family transcription factor EFM-like
TrEMBLA0A1S4C3020.0A0A1S4C302_TOBAC; uncharacterized protein LOC107814623
STRINGXP_009622698.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.17e-60G2-like family protein