PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622555.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22515.7 Da    PI: 8.4587
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.74e-1022521544
                    HHH.HHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF 15 kRr.ngilKKAeELSvLCdaevaviifsstg 44
                    kR+ ++++K A ELS+LC+a v +iifs+  
  XP_009622555.1 22 KRKiATLFKMADELSTLCEAIVTIIIFSPGE 52
                    666589**********************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.344149IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-111195IPR002100Transcription factor, MADS-box
PfamPF003194.2E-91152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSEKGLKNTK VCSERKRKAK EKRKIATLFK MADELSTLCE AIVTIIIFSP GETFPIVWPD  60
ESEAMVRVTK YLGHSEYERS KKLVLHETYL EKQIKNLEEE NNRKIARKSK EKEMEILFNQ  120
LFEGKMNTSD LDVAQTEGLL KLSARIKAKL DERKKQLNQQ EQTSDVQCPS TFSNATTEGH  180
DNEAGKKNDG LFNNID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622555.11e-143PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1U7W3791e-114A0A1U7W379_NICSY; agamous-like MADS-box protein AGL92
STRINGXP_009622555.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-11M-type_MADS family protein