PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622386.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 109aa MW: 12739.7 Da PI: 10.414 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.1 | 2.1e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_009622386.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 15.5 | 7.4e-07 | 81 | 109 | 8 | 36 |
K-box 8 sleeakaeslqqelakLkkeienLqreqR 36 +++++++++ ++e+ +Lk+++e Lqr+qR XP_009622386.1 81 NQSATDTQNNYHEYLRLKARVEPLQRSQR 109 3688999********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.03E-42 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.16E-34 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SSMTKTIEKY KRCSYATLEA NQSATDTQNN YHEYLRLKAR VEPLQRSQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-22 | 1 | 88 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 3e-22 | 1 | 88 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 3e-22 | 1 | 88 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 3e-22 | 1 | 88 | 1 | 83 | MEF2 CHIMERA |
6bz1_A | 3e-22 | 1 | 87 | 1 | 82 | MEF2 CHIMERA |
6bz1_B | 3e-22 | 1 | 87 | 1 | 82 | MEF2 CHIMERA |
6bz1_C | 3e-22 | 1 | 87 | 1 | 82 | MEF2 CHIMERA |
6bz1_D | 3e-22 | 1 | 87 | 1 | 82 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF335241 | 1e-149 | AF335241.1 Petunia x hybrida MADS-box transcription factor FBP23 (FBP23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622386.1 | 2e-75 | PREDICTED: MADS-box protein CMB1-like | ||||
Swissprot | Q7Y040 | 1e-71 | EJ2_SOLLC; MADS-box protein EJ2 | ||||
TrEMBL | A0A1U8ECS2 | 5e-70 | A0A1U8ECS2_CAPAN; MADS-box protein CMB1-like isoform X1 | ||||
TrEMBL | A0A1U8ECS4 | 5e-70 | A0A1U8ECS4_CAPAN; MADS-box protein CMB1-like isoform X2 | ||||
TrEMBL | Q9SEG8 | 5e-70 | Q9SEG8_CAPAN; Agamous-like MADS-box protein AGL3 | ||||
STRING | XP_009622386.1 | 6e-75 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 4e-60 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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