PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622386.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 109aa    MW: 12739.7 Da    PI: 10.414
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.12.1e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_009622386.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box15.57.4e-0781109836
           K-box   8 sleeakaeslqqelakLkkeienLqreqR 36 
                     +++++++++ ++e+ +Lk+++e Lqr+qR
  XP_009622386.1  81 NQSATDTQNNYHEYLRLKARVEPLQRSQR 109
                     3688999********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
CDDcd002653.03E-42278No hitNo description
SuperFamilySSF554551.16E-34283IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SSMTKTIEKY KRCSYATLEA NQSATDTQNN YHEYLRLKAR VEPLQRSQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-22188183MEF2 CHIMERA
6byy_B3e-22188183MEF2 CHIMERA
6byy_C3e-22188183MEF2 CHIMERA
6byy_D3e-22188183MEF2 CHIMERA
6bz1_A3e-22187182MEF2 CHIMERA
6bz1_B3e-22187182MEF2 CHIMERA
6bz1_C3e-22187182MEF2 CHIMERA
6bz1_D3e-22187182MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352411e-149AF335241.1 Petunia x hybrida MADS-box transcription factor FBP23 (FBP23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622386.12e-75PREDICTED: MADS-box protein CMB1-like
SwissprotQ7Y0401e-71EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A1U8ECS25e-70A0A1U8ECS2_CAPAN; MADS-box protein CMB1-like isoform X1
TrEMBLA0A1U8ECS45e-70A0A1U8ECS4_CAPAN; MADS-box protein CMB1-like isoform X2
TrEMBLQ9SEG85e-70Q9SEG8_CAPAN; Agamous-like MADS-box protein AGL3
STRINGXP_009622386.16e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.34e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]