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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009622295.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
NAC |
Protein Properties |
Length: 195aa MW: 22425.8 Da PI: 4.7138 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009622295.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 121.9 | 5.8e-38 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t +gyWk+ g d++++s+
XP_009622295.1 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKSLGLDEPIFSS 93
79*************************999.99**************977778899******9854........799****************99 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++vg+kk +fy g++p+g+kt+Wvm+e++l
XP_009622295.1 94 sSENKVGMKKYYAFYIGEQPEGVKTNWVMQEFSL 127
67788***************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010089 | Biological Process | xylem development |
GO:0043067 | Biological Process | regulation of programmed cell death |
GO:0048367 | Biological Process | shoot system development |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 195 aa
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to blast |
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE 60 GNKWYFYSRR TQSRITGNGY WKSLGLDEPI FSSSSENKVG MKKYYAFYIG EQPEGVKTNW 120 VMQEFSLSDS SNSSSGTSRS SSRRRSRSKI DYSKWVICRV HERNCDNDDD DGTELSCLDE 180 VFLSLDDLDE ISLPH
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-40 | 4 | 164 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-40 | 4 | 164 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-40 | 4 | 164 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-40 | 4 | 164 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-40 | 4 | 164 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-40 | 4 | 164 | 13 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975440 | 8e-55 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |