PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 22425.8 Da PI: 4.7138 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.9 | 5.8e-38 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t +gyWk+ g d++++s+ XP_009622295.1 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKSLGLDEPIFSS 93 79*************************999.99**************977778899******9854........799****************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk +fy g++p+g+kt+Wvm+e++l XP_009622295.1 94 sSENKVGMKKYYAFYIGEQPEGVKTNWVMQEFSL 127 67788***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-48 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.883 | 8 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-21 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE 60 GNKWYFYSRR TQSRITGNGY WKSLGLDEPI FSSSSENKVG MKKYYAFYIG EQPEGVKTNW 120 VMQEFSLSDS SNSSSGTSRS SSRRRSRSKI DYSKWVICRV HERNCDNDDD DGTELSCLDE 180 VFLSLDDLDE ISLPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-40 | 4 | 164 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-40 | 4 | 164 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-40 | 4 | 164 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-40 | 4 | 164 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-40 | 4 | 164 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-40 | 4 | 164 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-40 | 4 | 164 | 13 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 8e-55 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622295.1 | 1e-144 | PREDICTED: NAC domain-containing protein 104 isoform X1 | ||||
Refseq | XP_016435084.1 | 1e-144 | PREDICTED: NAC domain-containing protein 104-like isoform X1 | ||||
Swissprot | Q8GWK6 | 9e-92 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1S3X589 | 1e-143 | A0A1S3X589_TOBAC; NAC domain-containing protein 104-like isoform X1 | ||||
STRING | XP_009622295.1 | 1e-144 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-77 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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