PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622251.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 382aa    MW: 42075.7 Da    PI: 7.7612
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1752112257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++ +eq+++Le+ F++   +p ++e++++ +kl    ++ +++V++WFqNr+ + k+
  XP_009622251.1  52 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 112
                     89*****************99*************************************995 PP
2Wus_type_Homeobox111.73.8e-3651114265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
     XP_009622251.1  51 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 114
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.38248113IPR001356Homeobox domain
SuperFamilySSF466895.13E-1248117IPR009057Homeodomain-like
SMARTSM003894.9E-950117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-651120IPR009057Homeodomain-like
CDDcd000864.05E-851114No hitNo description
PfamPF000464.3E-1552112IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNQW QHDINSSLIQ RTPCNPVGGG GGGCEERSPE PKPRWNPRPE  60
QIRILEAIFN SGMVNPPRDE IRKIRAKLQE YGQVGDANVF YWFQNRKSRS KHKQRHLQNK  120
AQQTHNNTNI THSHVAITAP SSSSSSSDKS SPNSTGHHKS SLTFSIGSAN VMDLLNSPTA  180
SVNQQQQNYN FQSANNEFLS TESFFFTVQP PTPTQSPTAI TQGFCIPDST GFSHVSNSSG  240
HLFLSEWMGI GQAPSKKAED EKINLQSQLN YAVTSAPTTN THSTVFPLTS TTIPTISHIQ  300
GVVEPTDAGP TRSTVFINDV AFEVGLGPFN VREVFGDDAV LIHSSGEPLI TNEWGLTLQP  360
LQHGAFYYLL RTSTPSNTID LI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622251.10.0PREDICTED: WUSCHEL-related homeobox 9 isoform X1
RefseqXP_016462054.10.0PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
TrEMBLA0A1S3ZCJ30.0A0A1S3ZCJ3_TOBAC; WUSCHEL-related homeobox 9-like isoform X1
STRINGXP_009622251.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-58homeobox-3