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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 309aa MW: 35504.4 Da PI: 10.33 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.3 | 4.1e-11 | 11 | 79 | 16 | 87 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 +++p +fa+ g+++ k++tl + +g++W+v++ + + r+++++GW F +n++ g+++ Fkl++ XP_009622138.1 11 VTIPMTFARWTGIIN--MKKITLINGEGKKWKVNI--EHIGPRVLIKGGWAAFRTQNKIAaNGETCRFKLIQG 79 69******9999884..558***************..999999****************989*******9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.644 | 1 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.44E-6 | 10 | 82 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-10 | 10 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-10 | 10 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-8 | 11 | 79 | IPR003340 | B3 DNA binding domain |
Pfam | PF03004 | 8.5E-8 | 91 | 182 | IPR004252 | Probable transposase, Ptta/En/Spm, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MAVRKTHSLF VTIPMTFARW TGIINMKKIT LINGEGKKWK VNIEHIGPRV LIKGGWAAFR 60 TQNKIAANGE TCRFKLIQGY GRGRGRPCYV LQEKKYGRKM THDKFFMETH IRKKKTPTDP 120 SRWIEDRGET IYGRYKINVE EYTQSLPPNE QGERPSVSDE EAQKIWLDVV GGLKKGIAYG 180 LPERSFRYYR AGLQGIRTFA QGEIIYRLTL SSMEKKIAKL TAEVEQTKAR EQKRDEQFDT 240 LQVQLEKRDQ QFNLLQGQLT NLLASGAFPI LRSRGPSPNA NTSRRDSSNH VNEEASSSED 300 EHDTIQNTH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473169.1 | 1e-149 | PREDICTED: uncharacterized protein LOC107795098 | ||||
TrEMBL | A0A1S4A9B5 | 1e-148 | A0A1S4A9B5_TOBAC; uncharacterized protein LOC107795098 | ||||
STRING | XP_009622138.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 2e-09 | B3 family protein |