PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622136.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 896aa    MW: 101430 Da    PI: 9.9013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622136.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.9e-1328116298
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fk+    + ++s+rl++p +fa+++ ++  ++  + le +sg++Wev++    ++gr+ l+ GW++F +   +  g f++F ++ rs f  +v++
  XP_009622136.1  28 FKII--FSQHESSRLRIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSQGRICLGIGWQDFSDFYSISRGHFLMFGYNARSHF--NVSI 114
                     5655..34556678***********5454444..***************..999999**************************999999..9999 PP

                     E- CS
              B3  97 fr 98 
                     f+
  XP_009622136.1 115 FD 116
                     97 PP
2B340.64.5e-13347434497
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + ps+vlk  +l+++ kfa+++ +++ +   l+l+ + g sW+v+     +     +   WkeFv +n+Lk gD++vF++++ s+  + v++f
  XP_009622136.1 347 FMQPSYVLKPYILSISLKFARKYFLESYG--NLVLRVPGGGSWSVTR--AIGTTNAKIY--WKEFVLDNKLKFGDVCVFEVIEGSKLLMDVTIF 434
                     5789*******************888655..6***************..4444444455..*******************99878887777777 PP
3B340.64.4e-13599690599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     l ps+v+k  +l+++  f +++  ++e++  l+l+ +   sW vk+    ++ ++ ++  Wk Fv +n+Lk gD++vF+l++  s+  l v++fr
  XP_009622136.1 599 LQPSYVSKPYNLRISFLFSRKYF-PEECG-NLVLRVPGRGSWPVKYALGISKTQICFS--WKAFVLDNKLKFGDVCVFELIKGgSKLILDVTIFR 689
                     57899999999**********96.33454.9***************999999999998..*********************87799999999998 PP

                     S CS
              B3  99 k 99 
                     +
  XP_009622136.1 690 A 690
                     6 PP
4B351.91.4e-16805890897
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     s+++ + rl++  + a+++ + k++  +++l+ +s rsW vk+i   +     lt+GWkeFv +n+Lk+gD++vF+++ +s+  ++v++f
  XP_009622136.1 805 SSASGTMRLSITLTIARRFFSTKRS--DVVLQVSSKRSWAVKCIL--GTVNAKLTSGWKEFVLDNNLKVGDVCVFERVCTSKLLFNVTIF 890
                     3444448899999999999767555..7***************65..333346***********************99888887777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1819118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-1721118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.49125118IPR003340B3 DNA binding domain
CDDcd100172.99E-1125116No hitNo description
PfamPF023621.7E-927116IPR003340B3 DNA binding domain
SMARTSM010191.1E-928118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-16336435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-16337434IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-15342435No hitNo description
PROSITE profilePS5086310.221344437IPR003340B3 DNA binding domain
SMARTSM010191.7E-11344437IPR003340B3 DNA binding domain
PfamPF023621.4E-9347434IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-18587690IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-18588690IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-13594691IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321595691IPR003340B3 DNA binding domain
PfamPF023621.2E-10599690IPR003340B3 DNA binding domain
CDDcd100173.18E-17599689No hitNo description
Gene3DG3DSA:2.40.330.104.3E-23787891IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-19790891IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-15793890No hitNo description
SMARTSM010193.7E-10798893IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971798893IPR003340B3 DNA binding domain
PfamPF023624.0E-14804890IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MAAKPQLQSG EGSSHWKSST NITQPKFFKI IFSQHESSRL RIPEDFASRY CKNMLNPVYL  60
EVPSGEVWEV EVVHSQGRIC LGIGWQDFSD FYSISRGHFL MFGYNARSHF NVSIFDLSAS  120
EIEYPYSSAH GIHTPILHCH ETRHAPKRDQ SESDDSVEIL EGIPRSQKAK AIIPDTVEHS  180
VENLGHCPLG QSSKRKRQEG DVEHDVSNDV HVKRMKVEKL QEDVASPSFT REGQKHGEGT  240
VIEHSVEILD HRPSGHGSKR KGLEGDAEDD VSTDIHTRSI KVEKSREDVA SPSFTRKTKK  300
SGERCKMHKQ QSKSVHNQNK TVMDKERAIA YQRAIAFKSK NPFIIAFMQP SYVLKPYILS  360
ISLKFARKYF LESYGNLVLR VPGGGSWSVT RAIGTTNAKI YWKEFVLDNK LKFGDVCVFE  420
VIEGSKLLMD VTIFPAAGRR PMHKIAREEP GFCDSKNKII NTDNFVPCSQ SKIVQTKKLK  480
QQRGEEHGEG TEIEHSVEIL DHRPLGQGSK RKRPEGETKD DVSIDIHTKS IKVENTREDA  540
ASPSFTRNTK RSEESCRMHK QQSKMVYAKN KTVLDKERSI AYQRAKAFKS ENPFVIYFLQ  600
PSYVSKPYNL RISFLFSRKY FPEECGNLVL RVPGRGSWPV KYALGISKTQ ICFSWKAFVL  660
DNKLKFGDVC VFELIKGGSK LILDVTIFRA AESKPMHKID AKLAGVSDSK KKTIKTENSV  720
PCSQPKIVHS RKLNFEKKQR GDSDCFTSKI KEEFSEDTGK HVQQSKSSCK GSAVAKEMVL  780
AYQRAKAFTS ENPFFIYFMQ PSYVSSASGT MRLSITLTIA RRFFSTKRSD VVLQVSSKRS  840
WAVKCILGTV NAKLTSGWKE FVLDNNLKVG DVCVFERVCT SKLLFNVTIF TSAEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1556889418144B3 domain-containing transcription factor VRN1
4i1k_B3e-1556889418144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194215RKRQEGDVEHDVSNDVHVKRMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-45HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755143e-45HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622136.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X3
TrEMBLA0A1S4A9620.0A0A1S4A962_TOBAC; B3 domain-containing protein Os03g0619600-like
STRINGXP_009622136.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-18B3 family protein