PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009621899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 319aa MW: 36840.3 Da PI: 8.8114 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.1 | 1.1e-13 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+ + r+ tf kR++g++KK +E +LC+++ ++i++++++ XP_009621899.1 11 ISKEKARNATFKKRKEGLMKKLYEFTTLCNVNGCMIMYGPKQ 52 888999*********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-13 | 1 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.147 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-16 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.37E-18 | 2 | 95 | No hit | No description |
PRINTS | PR00404 | 1.2E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-15 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGRAKLKMEL ISKEKARNAT FKKRKEGLMK KLYEFTTLCN VNGCMIMYGP KQNNGSNSEP 60 EIWTNNSMQS GTSTNKTLQV EEIQNLIDEY KKESSTKTFG LSDYFLNRNK KVEEELIKLR 120 KKNMQKKYPC WLEFMNQLSE VKLREFLTLL DDKVEKVKSR IDLLKGNFSS EGLSQLTNNN 180 DNVNPLLVQG GMEYGGNFIN NNQEQAAIYP YCNSIINHQE MMMLMMNEND WQYNGASSSS 240 SSNGIGSNNM RCALMKYETM MSHNMMLNSQ MPYSSPYVAP TILQPTPYII MPSALPQMYH 300 PMKENEQDEK LKLSSYLRH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016498681.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_018632275.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S4CC33 | 0.0 | A0A1S4CC33_TOBAC; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_009621899.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-19 | M-type_MADS family protein |