PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009621830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 431aa MW: 49255.8 Da PI: 8.4462 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.2 | 5.2e-29 | 107 | 192 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+ vs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ ++++yf+qlea XP_009621830.1 107 RWPRQETLTLLEVRSQLDSKFKEANQKGPLWDGVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRYFRQLEA 192 8*************************************999*****************************98..55667*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.702 | 106 | 165 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.55E-18 | 107 | 172 | No hit | No description |
Pfam | PF13837 | 1.1E-19 | 107 | 193 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MDDHEYGMMD LTQYLNGRPI FSSNIQPHLQ SDFLCNHQHY EMVMATTVPQ HDNCLPHPTA 60 TATARPSVSG GGGGGGVTFS TASEMEGCGG GGGGGAMRGG GDGGNGRWPR QETLTLLEVR 120 SQLDSKFKEA NQKGPLWDGV SRIMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD 180 GKHYRYFRQL EALYGKTSNT ISISETNNIG SSNFHYNAIN NNNQEAHNFH PEGPKLSDSL 240 NNLSDSSDSD HATSSDDSEL NTDNDLKKKR KKRRGKRSWK ATIRDFVDIQ MKKLIEKQEA 300 WLEKMMKTIE HKEQERILRE EEWRKQESIR IENEQKFWAG ERAWIQARDT ALIDALRKLS 360 GDQELIKSNK NASICKDMNW DDINRIKCNK KQKENSLSSY YNFKNNEEGR SYCETSRHVP 420 NVHQMMDPGM F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 271 | KKRKK |
2 | 267 | 273 | KKRKKRR |
3 | 268 | 276 | KRKKRRGKR |
4 | 269 | 276 | RKKRRGKR |
5 | 270 | 275 | KKRRGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621830.1 | 0.0 | PREDICTED: trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 1e-93 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A1S3Z0L3 | 0.0 | A0A1S3Z0L3_TOBAC; trihelix transcription factor PTL-like | ||||
STRING | XP_009621830.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3063 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 9e-87 | Trihelix family protein |
Publications ? help Back to Top | |||
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