PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009621536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 265aa MW: 29604.5 Da PI: 6.6356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.5e-14 | 89 | 135 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_009621536.1 89 KSHIEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 135 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.59 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-11 | 89 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-15 | 90 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 90 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-13 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.34E-5 | 99 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.0E-4 | 173 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDEAGNISGG FMFPEMSPLL PWTVPQSFNT LHFPSNQVHY HDPFNLFPPV PSPYGGLFNR 60 RSSPFGLQDE LQKVSAQEIM DVKVLAASKS HIEAERRRRE RINNHLAKLR SLLPSTTKTD 120 KASLLAEVIQ HVKELKRQTS QITDTNPVPT EMDELTVDNY SSDEEGNFVI KASLCCEDRS 180 DLLPDLIKTL KSLRLRTLKA EITTLGGRVK NVLFVTHGDQ EDSNSINDDQ LQYSISSIQE 240 ALKAVIEKSS GTSGSVKRQI KGLLT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 99 | ERRRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621535.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Swissprot | Q9LS08 | 2e-83 | BH032_ARATH; Transcription factor AIG1 | ||||
Swissprot | Q9S7Y1 | 3e-83 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1S3YHA3 | 0.0 | A0A1S3YHA3_TOBAC; transcription factor bHLH30-like | ||||
STRING | XP_009621535.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 2e-75 | basic helix-loop-helix 32 |