PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009621535.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 265aa MW: 29604.5 Da PI: 6.6356

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009621535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.5e-14	89	135	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_009621535.1 89 KSHIEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 135 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.59	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-11	89	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-15	90	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-15	90	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-13	92	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-5	99	138	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.0E-4	173	242	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0080147	Biological Process	root hair cell development
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDEAGNISGG FMFPEMSPLL PWTVPQSFNT LHFPSNQVHY HDPFNLFPPV PSPYGGLFNR 60 RSSPFGLQDE LQKVSAQEIM DVKVLAASKS HIEAERRRRE RINNHLAKLR SLLPSTTKTD 120 KASLLAEVIQ HVKELKRQTS QITDTNPVPT EMDELTVDNY SSDEEGNFVI KASLCCEDRS 180 DLLPDLIKTL KSLRLRTLKA EITTLGGRVK NVLFVTHGDQ EDSNSINDDQ LQYSISSIQE 240 ALKAVIEKSS GTSGSVKRQI KGLLT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	99	ERRRRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269\|PubMed:20220754}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621535.1	0.0	PREDICTED: transcription factor bHLH30
Swissprot	Q9LS08	2e-83	BH032_ARATH; Transcription factor AIG1
Swissprot	Q9S7Y1	3e-83	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1S3YHA3	0.0	A0A1S3YHA3_TOBAC; transcription factor bHLH30-like
STRING	XP_009621535.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25710.1	2e-75	basic helix-loop-helix 32

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Jost R, et al. Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite. J. Exp. Bot., 2015. 66(9): p. 2501-14 [PMID:25697796] Vera-Sirera F, et al. A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants. Dev. Cell, 2015. 35(4): p. 432-43 [PMID:26609958] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]